WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C50H2.1a.1 Sequence Name  C50H2.1a.1
Length (nt)  3133   Chromosome Location  V: 9889839-9894849
Chromosome . Primary Identifier  V Chromosome Location . Start  9889839
Chromosome Location . End  9894849 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C50H2.1a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00008239 fshr-1 C50H2.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C50H2.1a C50H2.1a 2790   V: 9889960-9890222

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C50H2.1a.1 9889839 9894849 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

13 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon194043   384   V: 9889839-9890222 Caenorhabditis elegans
Exon194045   72   V: 9891278-9891349 Caenorhabditis elegans
Exon194047   150   V: 9891395-9891544 Caenorhabditis elegans
Exon194049   216   V: 9891594-9891809 Caenorhabditis elegans
Exon194051   75   V: 9891857-9891931 Caenorhabditis elegans
Exon194053   169   V: 9891981-9892149 Caenorhabditis elegans
Exon194055   217   V: 9892194-9892410 Caenorhabditis elegans
Exon194057   276   V: 9892611-9892886 Caenorhabditis elegans
Exon194059   181   V: 9892931-9893111 Caenorhabditis elegans
Exon194061   253   V: 9893185-9893437 Caenorhabditis elegans
Exon194063   393   V: 9893483-9893875 Caenorhabditis elegans
Exon194065   357   V: 9893943-9894299 Caenorhabditis elegans
Exon194067   390   V: 9894460-9894849 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C50H2.1a.1 9889839 9894849 1

1 Sequence

Length
3133

1 Sequence Ontology Term

Identifier Name Description
transcript