WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:R31.1e.1 Sequence Name  R31.1e.1
Length (nt)  12171   Chromosome Location  V: 11899564-11916141
Chromosome . Primary Identifier  V Chromosome Location . Start  11899564
Chromosome Location . End  11916141 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
R31.1e.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004855 sma-1 R31.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:R31.1e R31.1e 12171   V: 11899564-11899630

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:R31.1e.1 11899564 11916141 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

17 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon199967   67   V: 11899564-11899630 Caenorhabditis elegans
Exon199971   263   V: 11901108-11901370 Caenorhabditis elegans
Exon199977   180   V: 11901996-11902175 Caenorhabditis elegans
Exon199981   285   V: 11902785-11903069 Caenorhabditis elegans
Exon199988   384   V: 11903115-11903498 Caenorhabditis elegans
Exon199994   1499   V: 11903545-11905043 Caenorhabditis elegans
Exon200000   2158   V: 11905092-11907249 Caenorhabditis elegans
Exon200006   1556   V: 11907299-11908854 Caenorhabditis elegans
Exon200012   1089   V: 11908906-11909994 Caenorhabditis elegans
Exon200018   159   V: 11910199-11910357 Caenorhabditis elegans
Exon200024   1627   V: 11910406-11912032 Caenorhabditis elegans
Exon200030   1912   V: 11912081-11913992 Caenorhabditis elegans
Exon200036   516   V: 11914065-11914580 Caenorhabditis elegans
Exon200042   147   V: 11914737-11914883 Caenorhabditis elegans
Exon200051   59   V: 11915717-11915775 Caenorhabditis elegans
Exon200057   217   V: 11915824-11916040 Caenorhabditis elegans
Exon200061   53   V: 11916089-11916141 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:R31.1e.1 11899564 11916141 1

1 Sequence

Length
12171

1 Sequence Ontology Term

Identifier Name Description
transcript