WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00235322 Gene Name  F32F2.4
Sequence Name  ? F32F2.4 Organism  Caenorhabditis elegans
Automated Description  Is affected by dpy-21 and csr-1 based on RNA-seq studies. Biotype  SO:0001217
Genetic Position  Length (nt)  ? 102
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00235322

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:F32F2.4.1 F32F2.4.1 102   V: 13276259-13276360
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F32F2.4 F32F2.4 102   V: 13276259-13276360

13 RNAi Result

WormBase ID
WBRNAi00001458
WBRNAi00046151
WBRNAi00014230
WBRNAi00031691
WBRNAi00081107
WBRNAi00091681
WBRNAi00091696
WBRNAi00091711
WBRNAi00091726
WBRNAi00091741
WBRNAi00091756
WBRNAi00091777
WBRNAi00075850

13 Allele

Public Name
gk963271
gk963706
gk963301
gk964458
gk964459
gk963631
gk964462
gk964191
tm11034
WBVar01869332
ok884
gk251304
gk554836

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
WBGene00235322 13276259 13276360 1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

0 Downstream Intergenic Region

6 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly increased expression in csr-1a(tor159) comparing to in N2 at 25C. DESeq2, fold change > 2, p-value < 0.05. WBPaper00061753:csr-1(tor159)_upregulated_25C
  Transcripts that showed significantly increased expression in dpy-21(e428) comparing to in N2 during L3 stage. DESeq v1.6.3. Fold change > 1.5. WBPaper00050370:dpy-21(e428)_L3_upregulated
  Germline-enriched and sex-biased expression profile cluster B. hierarchical clustering [cgc6390]:Cluster_B
  Genome-wide analysis of developmental and sex-regulated gene expression profile. self-organizing map cgc4489_group_8
  Transcripts that showed significantly decreased expression in day 1 adult hermaphrodite comparing to in L4 larva fem-3(q20) animals. Fold change > 2, FDR < 0.05 WBPaper00064088:Day-1-adult_vs_L4_downregulated_fem-3(q20)
  Transcripts that showed significantly decreased expression in day 3 adult hermaphrodite comparing to in L4 larva fem-3(q20) animals. Fold change > 2, FDR < 0.05 WBPaper00064088:Day-3-adult_vs_L4_downregulated_fem-3(q20)

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier
Start End Strand
WBGene00235322 13276259 13276360 1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
102

1 Sequence Ontology Term