WormMine: Gene WBGene00219584

• WormBase Gene ID: WBGene00219584
• Gene Name: linc-162
• Sequence Name: F20G2.10
• Organism: Caenorhabditis elegans
• Automated Description: Is affected by several genes including npr-1; glp-1; and ikb-1 based on RNA-seq studies.
• Biotype: SO:0001641
• Genetic Position: V :5.58661±
• Length (nt): 558

1 Organism

• Name: Caenorhabditis elegans
• Taxon Id: 6239

1 Synonyms

• Value: WBGene00219584

Genomics

1 Transcripts

WormMine ID	Sequence Name	Length (nt)	Chromosome Location
Transcript:F20G2.10	F20G2.10	558	V: 13753828-13754385

Other

0 CDSs

2 RNAi Result

• WBRNAi00013641
• WBRNAi00091329

14 Allele

• gk963271
• gk963706
• gk963301
• gk964458
• gk964459
• tm11108
• WBVar01975316
• WBVar00013795
• WBVar02070170
• WBVar01842555
• WBVar01842554
• gk914805
• gk252321
• gk252322

1 Chromosome

• WormBase ID: V
• Organism: Caenorhabditis elegans
• Length (nt): 20924180

1 Chromosome Location

• Feature . Primary Identifier: WBGene00219584
• Start: 13753828
• End: 13754385
• Strand: 1

2 Data Sets

• WormBaseAcedbConverter
• C. elegans genomic annotations (GFF3 Gene)

1 Downstream Intergenic Region

• WormBase ID: intergenic_region_chrV_13754386..13755010
• Length (nt): 625
• Chromosome Location: V: 13754386-13755010
• Organism: Caenorhabditis elegans

4 Expression Clusters

Regulated By Treatment	Description	Algorithm	Primary Identifier
	Transcripts that showed significantly increased expression glp-1(e2141); TU3401 animals comparing to in TU3401 animals.	Fold change > 2, FDR < 0.01.	WBPaper00065993:glp-1(e2141)_upregulated
	Transcripts that showed significantly increased expression in ogt-1(ok1474) neuronal cells isolated by FACs comparing to in FACs isolated neuronal cells from wild type.	DESeq2, fold change > 2, FDR < 0.05.	WBPaper00066485:ogt-1(ok1474)_upregulated_neuron
	Genes that showed significantly altered expression between N2 and npr-1(ur89) strains exposed to either the nematocidal B. thuringiensis B-18247, the pathogenic P. aeruginosa PA14, or the control E. coli OP50 for 12 or 24 hours.	Estimation of transcript abundance and significantly differentially expressed genes were identified by Cuffdiff using the quartile normalization method. Transcripts with a significant change between different conditions (adjusted p-value < 0.01 by the false discovery rate, FDR) were treated as signature for each comparison.	WBPaper00049498:npr-1(ur89)_regulated_7
	Transcripts that showed significantly increased expression in ikb-1(nr2027) animals at L1 larva stage, comparing to in N2 animals.	Differentially expressed genes between wild type and knockouts were explored using DESeq2 R package (v.1.20.0) considering a threshold of adjusted p value < 0.01.	WBPaper00060445:ikb-1(nr2027)_upregulated_L1

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations

• Feature . Primary Identifier: WBGene00219584
• Start: 13753828
• End: 13754385
• Strand: 1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

• Length: 558

1 Sequence Ontology Term