WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T08G5.5c.1 Sequence Name  T08G5.5c.1
Length (nt)  3057   Chromosome Location  V: 14034328-14038378
Chromosome . Primary Identifier  V Chromosome Location . Start  14034328
Chromosome Location . End  14038378 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T08G5.5c.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00011625 vps-39 T08G5.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T08G5.5c T08G5.5c 2763   V: 14034593-14034805

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:T08G5.5c.1 14034328 14038378 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon206151   478   V: 14034328-14034805 Caenorhabditis elegans
Exon206155   584   V: 14035405-14035988 Caenorhabditis elegans
Exon206160   532   V: 14036045-14036576 Caenorhabditis elegans
Exon206162   281   V: 14036622-14036902 Caenorhabditis elegans
Exon206168   369   V: 14036956-14037324 Caenorhabditis elegans
Exon206172   293   V: 14037377-14037669 Caenorhabditis elegans
Exon206176   143   V: 14037714-14037856 Caenorhabditis elegans
Exon206180   209   V: 14037905-14038113 Caenorhabditis elegans
Exon206184   66   V: 14038164-14038229 Caenorhabditis elegans
Exon206188   102   V: 14038277-14038378 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:T08G5.5c.1 14034328 14038378 -1

1 Sequence

Length
3057

1 Sequence Ontology Term

Identifier Name Description
transcript