WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00050973 Gene Name  Y26G10.3
Sequence Name  ? Y26G10.3 Organism  Caenorhabditis elegans
Automated Description  Enriched in male based on RNA-seq studies. Is affected by dpy-21 and let-60 based on RNA-seq and microarray studies. Biotype  SO:0000336
Genetic Position  Length (nt)  ? 1756
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00050973

Genomics

0 Transcripts

 

Other

0 CDSs

0 RNAi Result

69 Allele

Public Name
gk963271
gk963489
gk963304
gk963637
gk964050
gk962704
gk962630
WBVar01692874
WBVar01977008
WBVar01977009
WBVar01653901
WBVar01653902
WBVar01653900
WBVar01653893
WBVar01653894
WBVar01653897
WBVar01653898
WBVar01653895
WBVar01653896
WBVar01653899
tm11194
WBVar02124505
WBVar01595906
WBVar01595907
WBVar01595904
WBVar01595905
WBVar00595798
WBVar01464833
WBVar01464834
WBVar00050940

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
WBGene00050973 17704362 17706117 1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

0 Downstream Intergenic Region

4 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly increased expression in dpy-21(e428) comparing to in N2 during L3 stage. DESeq v1.6.3. Fold change > 1.5. WBPaper00050370:dpy-21(e428)_L3_upregulated
  Genome-wide analysis of developmental and sex-regulated gene expression profile. self-organizing map cgc4489_group_14
  Transcripts enriched in male him-5(e1490 animals, comparing to in N2 hermaphrodite animals from L3 larva to young adult stages. DESeq FDR < 0.01. WBPaper00050231:male_enriched
  The cluster contains genes that showed expression changes in the let-60(G12V) time course that were different than those in the wild-type time course. A mixed procedure analysis of variation (ANOVA) was used to identify genes with significantly different expression levels (P < 0.001). [cgc5376]:let-60(G12V)-regulated_genes

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier
Start End Strand
WBGene00050973 17704362 17706117 1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
1756

1 Sequence Ontology Term