WormMine: Gene WBGene00219233

• WormBase Gene ID: WBGene00219233
• Gene Name: mir-5552
• Sequence Name: Y59A8B.39
• Organism: Caenorhabditis elegans
• Automated Description: Is affected by several genes including mrps-5; alg-1; and alg-2 based on RNA-seq studies.
• Biotype: SO:0001265
• Genetic Position: V :13.4967±
• Length (nt): 110

1 Organism

• Name: Caenorhabditis elegans
• Taxon Id: 6239

1 Synonyms

• Value: WBGene00219233

Genomics

2 Transcripts

WormMine ID	Sequence Name	Length (nt)	Chromosome Location
Transcript:Y59A8B.39a	Y59A8B.39a	23	V: 18036749-18036771
Transcript:Y59A8B.39b	Y59A8B.39b	23	V: 18036790-18036812

Other

0 CDSs

4 RNAi Result

• WBRNAi00000321
• WBRNAi00037628
• WBRNAi00075333
• WBRNAi00075334

16 Allele

• gk963271
• gk963489
• gk963304
• gk963809
• gk963637
• gk962704
• gk962630
• gk963132
• gk963133
• WBVar02062678
• WBVar01998531
• WBVar02032668
• WBVar01637806
• WBVar01654561
• WBVar01991855
• WBVar02052517

1 Chromosome

• WormBase ID: V
• Organism: Caenorhabditis elegans
• Length (nt): 20924180

1 Chromosome Location

• Feature . Primary Identifier: WBGene00219233
• Start: 18036732
• End: 18036841
• Strand: 1

2 Data Sets

• WormBaseAcedbConverter
• C. elegans genomic annotations (GFF3 Gene)

0 Downstream Intergenic Region

7 Expression Clusters

Regulated By Treatment	Description	Algorithm	Primary Identifier
	Transcripts that showed significantly decreased expression in mrps-5(RNAi) animals comparing to animals injected with empty vector.	Differential expression was assessed using a Partial least-squares discriminant analysis (PLS-DA) using mixomics setting a variable of importance (VIP) score of greater than 1 as significant.	WBPaper00059328:mrps-5(RNAi)_downregulated_mRNA
Hypoxia: 0.5% oxygen 2 hours.	Transcripts that showed significantly increased expression after hypoxia in an egl-9 / hif-1 independent manner.	DESeq2 p-value <0.05, expression of hypoxia vs. normxia >= 2, expression in egl09(sa307) vs N2 < 2, expression of egl-9(sa307); hif-1(ia04) vs N2 <= 2.	WBPaper00055344:hypoxia_regulated_HIF-1_independent
	MicroRNAs that showed significantly decreased expression in alg-5(ram2), comparing to in N2.	DESeq2, Fold change > 1.5.	WBPaper00051404:alg-5(ram2)_downregulated_miRNA
	MicroRNAs that showed significantly increased expression in alg-2(ok304), comparing to in N2.	DESeq2, Fold change > 1.5.	WBPaper00051404:alg-2(ok304)_upregulated_miRNA
	MicroRNAs that showed significantly decreased expression in alg-5(tm1163), comparing to in N2.	DESeq2, Fold change > 1.5.	WBPaper00051404:alg-5(tm1163)_downregulated_miRNA
Fasting for 48 hours, from 3 days post L4 to 5 days post L4.	MicroRNAs that showed significantly increased expression after 48 hours of fasting	p < 0.0002, Fishers exact test.	WBPaper00051247:fasting_upregulated
	MicroRNAs that showed significantly increased expression in alg-1(gk214), comparing to in N2.	DESeq2, Fold change > 1.5.	WBPaper00051404:alg-1(gk214)_upregulated_miRNA

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations

• Feature . Primary Identifier: WBGene00219233
• Start: 18036732
• End: 18036841
• Strand: 1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

• Length: 110

1 Sequence Ontology Term