WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

CDS :

WormMine ID  CDS:F38A6.3b Sequence Name  F38A6.3b
Length (nt)  2166   Chromosome Location  V: 20780502-20780521
Chromosome . Primary Identifier  V Chromosome Location . Start  20780502
Chromosome Location . End  20780521
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F38A6.3b

Proteins

1 Protein

WormBase ID Name Molecular Weight (kDa) Length Organism
CE42263 HIF-1, isoform b 80.1 721 Caenorhabditis elegans
 

Other

53 RNAi

WormBase ID
WBRNAi00084311
WBRNAi00113227
WBRNAi00102038
WBRNAi00046680
WBRNAi00014535
WBRNAi00087903
WBRNAi00102039
WBRNAi00113163
WBRNAi00112997
WBRNAi00093231
WBRNAi00080891
WBRNAi00080890
WBRNAi00080892
WBRNAi00084299
WBRNAi00080893
WBRNAi00084295
WBRNAi00084298
WBRNAi00112721
WBRNAi00111960
WBRNAi00070606
WBRNAi00070605
WBRNAi00113117
WBRNAi00070608
WBRNAi00092718
WBRNAi00092717
WBRNAi00092077
WBRNAi00092076
WBRNAi00092079
WBRNAi00092078
WBRNAi00103107

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
CDS:F38A6.3b 20780502 20780521 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans CDS sequence (Fasta)  

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00001851 hif-1 F38A6.3 Caenorhabditis elegans

9 Locations


Feature . Primary Identifier
Start End Strand
CDS:F38A6.3b 20780502 20780521 1
CDS:F38A6.3b 20781315 20781505 1
CDS:F38A6.3b 20781632 20781786 1
CDS:F38A6.3b 20781832 20782146 1
CDS:F38A6.3b 20782664 20783222 1
CDS:F38A6.3b 20783738 20784065 1
CDS:F38A6.3b 20784136 20784392 1
CDS:F38A6.3b 20784473 20784645 1
CDS:F38A6.3b 20784694 20784861 1

1 Sequence

Length
2166

1 Sequence Ontology Term

Identifier Name Description
CDS  

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:F38A6.3b.1 F38A6.3b.1 2660   V: 20780407-20785260