WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

GO Term : GO:0097525 spliceosomal snRNP complex GO

Namespace  cellular_component Obsolete  false
Description  A small ribonucleoprotein complex involved in formation of the spliceosome.

0 Cross References

0 Data Sets

1 Ontology

Name
GO

0 Ontology Annotations

14 Parents

Identifier Name Description
GO:0032991 protein-containing complex A stable assembly of two or more macromolecules, i.e. proteins, nucleic acids, carbohydrates or lipids, in which at least one component is a protein and the constituent parts function together.
GO:0005575 cellular_component A location, relative to cellular compartments and structures, occupied by a macromolecular machine. There are three types of cellular components described in the gene ontology: (1) the cellular anatomical entity where a gene product carries out a molecular function (e.g., plasma membrane, cytoskeleton) or membrane-enclosed compartments (e.g., mitochondrion); (2) virion components, where viral proteins act, and (3) the stable macromolecular complexes of which gene product are parts (e.g., the clathrin complex).
GO:0005622 intracellular anatomical structure A component of a cell contained within (but not including) the plasma membrane. In eukaryotes it includes the nucleus and cytoplasm.
GO:0110165 cellular anatomical structure A part of a cellular organism consisting of a material entity with granularity above the level of a protein complex but below that of an anatomical system. Note that cellular organisms exclude viruses.
GO:0140513 nuclear protein-containing complex A stable assembly of two or more macromolecules, i.e. proteins, nucleic acids, carbohydrates or lipids, in which at least one component is a protein and the constituent parts function together in the nucleus.
GO:0043227 membrane-bounded organelle Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane.
GO:0043226 organelle Organized structure of distinctive morphology and function. Includes the nucleus, mitochondria, plastids, vacuoles, vesicles, ribosomes and the cytoskeleton, and prokaryotic structures such as anammoxosomes and pirellulosomes. Excludes the plasma membrane.
GO:0005634 nucleus A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO:0043229 intracellular organelle Organized structure of distinctive morphology and function, occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, vesicles, ribosomes and the cytoskeleton. Excludes the plasma membrane.
GO:0043231 intracellular membrane-bounded organelle Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane and occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane.
GO:1990904 ribonucleoprotein complex A macromolecular complex that contains both RNA and protein molecules.
GO:0120114 Sm-like protein family complex A protein complex containing members of the Like-Sm family of proteins, which includes both the Sm proteins and the Lsm proteins, and which generally form hexameric or heptameric ring structures which bind to RNA. While some of these ring complexes may form independently of RNA, many only form in association with their target RNA. In addition to Lsm-family proteins, many of these complexes contain additional protein members. Members of this family of complexes include the snRNPs which comprise the majority of the spliceosome. Others are involved in the 5' to 3' degradation pathways of mRNAs in the cytoplasm and of unspliced transcripts in the nucleus, as well as other diverse roles.
GO:0030532 small nuclear ribonucleoprotein complex A ribonucleoprotein complex that contains at least one RNA of the small nuclear RNA (snRNA) class and as well as its associated proteins. These are typically named after the snRNA(s) they contain, e.g. U1 snRNP, U4/U6 snRNP, or 7SK snRNP. Many, of these complexes become part of the spliceosome involved in splicing of nuclear mRNAs. Others are involved in regulation of transcription elongation or 3'-end processing of replication-dependent histone pre-mRNAs.
GO:0097525 spliceosomal snRNP complex A small ribonucleoprotein complex involved in formation of the spliceosome.

54 Relations

Relationship
Parent Term . Identifier

Child Term . Identifier
has part GO:0097525 GO:0000243
is_a GO:0097525 GO:0005682
is_a GO:0097525 GO:0005685
is_a GO:0097525 GO:0005686
is_a GO:0097525 GO:0005687
is_a GO:0097525 GO:0005688
is_a GO:0097525 GO:0005690
is_a GO:0097525 GO:0005691
is_a GO:0097525 GO:0005692
is_a GO:0097525 GO:0005693
is_a GO:0097525 GO:0034693
is_a GO:0097525 GO:0046540
has part GO:0097525 GO:0046540
is_a GO:0097525 GO:0071001
has part GO:0097525 GO:0071001
is_a GO:0097525 GO:0071002
has part GO:0097525 GO:0071002
is_a GO:0097525 GO:0071003
has part GO:0097525 GO:0071003
has part GO:0097525 GO:0071004
has part GO:0097525 GO:0071005
has part GO:0097525 GO:0071006
has part GO:0097525 GO:0071007
has part GO:0097525 GO:0071008
has part GO:0097525 GO:0071009
is_a GO:0097525 GO:0071009
has part GO:0097525 GO:0071012
has part GO:0097525 GO:0071013
has part GO:0097525 GO:0071014
has part GO:0097525 GO:0071015

0 Synonyms