WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

GO Term : GO:0000407 phagophore assembly site GO

Namespace  cellular_component Obsolete  false
Description  Punctate structures proximal to the endoplasmic reticulum which are the sites where the Atg machinery assembles upon autophagy induction.

0 Cross References

1 Data Sets

Name URL
GO Annotation data set  

1 Ontology

Name
GO

18 Ontology Annotations

Annotation Extension Qualifier
  located_in
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  located_in
  located_in
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5 Parents

Identifier Name Description
GO:0005737 cytoplasm The contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
GO:0005575 cellular_component A location, relative to cellular compartments and structures, occupied by a macromolecular machine. There are three types of cellular components described in the gene ontology: (1) the cellular anatomical entity where a gene product carries out a molecular function (e.g., plasma membrane, cytoskeleton) or membrane-enclosed compartments (e.g., mitochondrion); (2) virion components, where viral proteins act, and (3) the stable macromolecular complexes of which gene product are parts (e.g., the clathrin complex).
GO:0005622 intracellular anatomical structure A component of a cell contained within (but not including) the plasma membrane. In eukaryotes it includes the nucleus and cytoplasm.
GO:0110165 cellular anatomical structure A part of a cellular organism consisting of a material entity with granularity above the level of a protein complex but below that of an anatomical system. Note that cellular organisms exclude viruses.
GO:0000407 phagophore assembly site Punctate structures proximal to the endoplasmic reticulum which are the sites where the Atg machinery assembles upon autophagy induction.

9 Relations

Relationship
Parent Term . Identifier

Child Term . Identifier
part of GO:0005737 GO:0000407
is_a GO:0110165 GO:0000407
part of GO:0110165 GO:0000407
part of GO:0005622 GO:0000407
part of GO:0005575 GO:0000407
is_a GO:0005575 GO:0000407
part of GO:0000407 GO:0034045
part of GO:0000407 GO:0062079
part of GO:0000407 GO:0097632

3 Synonyms

Name Type
PAS synonym
perivacuolar space synonym
pre-autophagosomal structure synonym