WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

GO Term : GO:0001046 core promoter sequence-specific DNA binding GO
Namespace  molecular_function Obsolete  false
Description  Binding to a sequence of DNA that is part of a core promoter region. The core promoter is composed of the transcription start site and binding sites for the RNA polymerase and the basal transcription machinery. The transcribed region might be described as a gene, cistron, or operon.
Paste the following link
Lists
This GOTerm isn't in any lists. Upload a list.

0 Cross References

1 Data Sets

Name URL
GO Annotation data set  

1 Ontology

Name
GO

6 Ontology Annotations

Annotation Extension Qualifier
  enables
  enables
  contributes_to
  enables
  contributes_to
  contributes_to

10 Parents

Identifier Name Description
GO:0003674 molecular_function A molecular process that can be carried out by the action of a single macromolecular machine, usually via direct physical interactions with other molecular entities. Function in this sense denotes an action, or activity, that a gene product (or a complex) performs.
GO:0005488 binding The selective, non-covalent, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule.
GO:0003676 nucleic acid binding Binding to a nucleic acid.
GO:1990837 sequence-specific double-stranded DNA binding Binding to double-stranded DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA, e.g. promotor binding or rDNA binding.
GO:0003677 DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO:0003690 double-stranded DNA binding Binding to double-stranded DNA.
GO:0043565 sequence-specific DNA binding Binding to DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding.
GO:0001067 transcription regulatory region nucleic acid binding Binding to a nucleic acid region that regulates a nucleic acid-based process. Such processes include transcription, DNA replication, and DNA repair.
GO:0000976 transcription cis-regulatory region binding Binding to a specific sequence of DNA that is part of a regulatory region that controls transcription of that section of the DNA. The transcribed region might be described as a gene, cistron, or operon.
GO:0001046 core promoter sequence-specific DNA binding Binding to a sequence of DNA that is part of a core promoter region. The core promoter is composed of the transcription start site and binding sites for the RNA polymerase and the basal transcription machinery. The transcribed region might be described as a gene, cistron, or operon.

17 Relations

Relationship
Parent Term . Identifier
Child Term . Identifier
is_a GO:0001046 GO:0000979
is_a GO:0000976 GO:0001046
is_a GO:1990837 GO:0001046
is_a GO:0043565 GO:0001046
is_a GO:0003674 GO:0001046
is_a GO:0001067 GO:0001046
is_a GO:0003676 GO:0001046
is_a GO:0005488 GO:0001046
is_a GO:0003677 GO:0001046
is_a GO:0003690 GO:0001046
is_a GO:0001046 GO:0001164
has part GO:0001046 GO:0016987
has part GO:0001046 GO:0016987
negatively regulates GO:0001046 GO:1904797
negatively regulates GO:0001046 GO:1904797
positively regulates GO:0001046 GO:1904798
positively regulates GO:0001046 GO:1904798

5 Synonyms

Name Type
bacterial-type RNA polymerase core promoter sequence-specific DNA binding synonym
core promoter binding synonym
eubacterial-type RNA polymerase core promoter sequence-specific DNA binding synonym
GO:0000985 alt_id
GO:0001047 alt_id