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Intermine data mining platform for C. elegans and related nematodes

GO Term : GO:0001228 DNA-binding transcription activator activity, RNA polymerase II-specific GO
Namespace  molecular_function Obsolete  false
Description  A DNA-binding transcription factor activity that activates or increases transcription of specific gene sets transcribed by RNA polymerase II.
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0 Cross References

1 Data Sets

Name URL
GO Annotation data set  

1 Ontology

Name
GO

62 Ontology Annotations

Annotation Extension Qualifier
  enables
  enables
  enables
  enables
  enables
has_input(WB:WBGene00000903),occurs_in(WBbt:0005666) enables
  enables
  enables
  enables
  enables
  enables
  enables
  enables
  enables
  enables
has_input(WB:WBGene00001186),occurs_in(WBbt:0005753) enables
has_input(WB:WBGene00006923),happens_during(GO:0006979) enables
  enables
  enables
  enables
has_input(WB:WBGene00000435) enables
  enables
  enables
  enables
  enables
  enables
  enables
  enables
  enables
  enables

50 Parents

Identifier Name Description
GO:0008150 biological_process A biological process is the execution of a genetically-encoded biological module or program. It consists of all the steps required to achieve the specific biological objective of the module. A biological process is accomplished by a particular set of molecular functions carried out by specific gene products (or macromolecular complexes), often in a highly regulated manner and in a particular temporal sequence.
GO:0003674 molecular_function A molecular process that can be carried out by the action of a single macromolecular machine, usually via direct physical interactions with other molecular entities. Function in this sense denotes an action, or activity, that a gene product (or a complex) performs.
GO:0005575 cellular_component A location, relative to cellular compartments and structures, occupied by a macromolecular machine. There are three types of cellular components described in the gene ontology: (1) the cellular anatomical entity where a gene product carries out a molecular function (e.g., plasma membrane, cytoskeleton) or membrane-enclosed compartments (e.g., mitochondrion); (2) virion components, where viral proteins act, and (3) the stable macromolecular complexes of which gene product are parts (e.g., the clathrin complex).
GO:0005622 intracellular anatomical structure A component of a cell contained within (but not including) the plasma membrane. In eukaryotes it includes the nucleus and cytoplasm.
GO:0110165 cellular anatomical structure A part of a cellular organism consisting of a material entity with granularity above the level of a protein complex but below that of an anatomical system. Note that cellular organisms exclude viruses.
GO:0065007 biological regulation Any process that modulates a measurable attribute of any biological process, quality or function.
GO:0019222 regulation of metabolic process Any process that modulates the frequency, rate or extent of the chemical reactions and pathways within a cell or an organism.
GO:0050794 regulation of cellular process Any process that modulates the frequency, rate or extent of a cellular process, any of those that are carried out at the cellular level, but are not necessarily restricted to a single cell. For example, cell communication occurs among more than one cell, but occurs at the cellular level.
GO:0060255 regulation of macromolecule metabolic process Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving macromolecules, any molecule of high relative molecular mass, the structure of which essentially comprises the multiple repetition of units derived, actually or conceptually, from molecules of low relative molecular mass.
GO:0080090 regulation of primary metabolic process Any process that modulates the frequency, rate or extent of the chemical reactions and pathways within a cell or an organism involving those compounds formed as a part of the normal anabolic and catabolic processes. These processes take place in most, if not all, cells of the organism.
GO:0019219 regulation of nucleobase-containing compound metabolic process Any cellular process that modulates the frequency, rate or extent of the chemical reactions and pathways involving nucleobases, nucleosides, nucleotides and nucleic acids.
GO:0050789 regulation of biological process Any process that modulates the frequency, rate or extent of a biological process. Biological processes are regulated by many means; examples include the control of gene expression, protein modification or interaction with a protein or substrate molecule.
GO:0005488 binding The selective, non-covalent, often stoichiometric, interaction of a molecule with one or more specific sites on another molecule.
GO:0003676 nucleic acid binding Binding to a nucleic acid.
GO:0043226 organelle Organized structure of distinctive morphology and function. Includes the nucleus, mitochondria, plastids, vacuoles, vesicles, ribosomes and the cytoskeleton, and prokaryotic structures such as anammoxosomes and pirellulosomes. Excludes the plasma membrane.
GO:0043229 intracellular organelle Organized structure of distinctive morphology and function, occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, vesicles, ribosomes and the cytoskeleton. Excludes the plasma membrane.
GO:0043228 membraneless organelle Organized structure of distinctive morphology and function, not bounded by a lipid bilayer membrane. Includes ribosomes, the cytoskeleton and chromosomes.
GO:0043232 intracellular membraneless organelle Organized structure of distinctive morphology and function, not bounded by a lipid bilayer membrane and occurring within the cell. Includes ribosomes, the cytoskeleton and chromosomes.
GO:0006357 regulation of transcription by RNA polymerase II Any process that modulates the frequency, rate or extent of transcription mediated by RNA polymerase II.
GO:0010468 regulation of gene expression Any process that modulates the frequency, rate or extent of gene expression. Gene expression is the process in which a gene's coding sequence is converted into a mature gene product (protein or RNA).
GO:0009889 regulation of biosynthetic process Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of substances.
GO:2001141 regulation of RNA biosynthetic process Any process that modulates the frequency, rate or extent of RNA biosynthetic process.
GO:0051252 regulation of RNA metabolic process Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving RNA.
GO:0010556 regulation of macromolecule biosynthetic process Any process that modulates the rate, frequency or extent of the chemical reactions and pathways resulting in the formation of a macromolecule, any molecule of high relative molecular mass, the structure of which essentially comprises the multiple repetition of units derived, actually or conceptually, from molecules of low relative molecular mass.
GO:0006355 regulation of DNA-templated transcription Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
GO:0000785 chromatin The ordered and organized complex of DNA, protein, and sometimes RNA, that forms the chromosome.
GO:0005694 chromosome A structure composed of a very long molecule of DNA and associated proteins (e.g. histones) that carries hereditary information.
GO:1990837 sequence-specific double-stranded DNA binding Binding to double-stranded DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA, e.g. promotor binding or rDNA binding.
GO:0003677 DNA binding Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO:0003690 double-stranded DNA binding Binding to double-stranded DNA.

53 Relations

Relationship
Parent Term . Identifier
Child Term . Identifier
part of GO:0045944 GO:0001228
part of GO:0045944 GO:0001228
is_a GO:0140110 GO:0001228
has part GO:0000977 GO:0001228
is_a GO:0001216 GO:0001228
is_a GO:0000981 GO:0001228
has part GO:0000976 GO:0001228
part of GO:1902680 GO:0001228
part of GO:0010557 GO:0001228
part of GO:0008150 GO:0001228
has part GO:0000977 GO:0001228
part of GO:0009889 GO:0001228
part of GO:0045935 GO:0001228
occurs in GO:0043232 GO:0001228
part of GO:0010556 GO:0001228
occurs in GO:0000785 GO:0001228
part of GO:2001141 GO:0001228
is_a GO:0003700 GO:0001228
part of GO:0045893 GO:0001228
has part GO:0003690 GO:0001228
part of GO:0009891 GO:0001228
part of GO:0060255 GO:0001228
part of GO:0009893 GO:0001228
part of GO:0048522 GO:0001228
part of GO:0010468 GO:0001228
part of GO:0051254 GO:0001228
part of GO:0051252 GO:0001228
occurs in GO:0110165 GO:0001228
occurs in GO:0005575 GO:0001228
occurs in GO:0005694 GO:0001228

26 Synonyms

Name Type
RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription synonym
proximal promoter DNA-binding transcription activator activity, RNA polymerase II-specific synonym
RNA polymerase II transcription regulatory region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription synonym
RNA polymerase II distal enhancer sequence-specific DNA-binding transcription factor activity involved in positive regulation of transcription synonym
RNA polymerase II transcriptional activator activity, metal ion regulated core promoter proximal region sequence-specific binding synonym
RNA polymerase II transcriptional activator activity, copper ion regulated proximal promoter sequence-specific DNA binding synonym
RNA polymerase II transcriptional activator activity, zinc ion regulated core promoter proximal region sequence-specific binding synonym
RNA polymerase II transcriptional activator activity, metal ion regulated proximal promoter sequence-specific DNA binding synonym
sequence-specific distal enhancer binding RNA polymerase II transcription factor activity involved in positive regulation of transcription synonym
RNA polymerase II transcriptional activator activity, zinc ion regulated proximal promoter sequence-specific DNA binding synonym
transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding synonym
transcriptional activator activity, metal ion regulated sequence-specific DNA binding synonym
transcriptional activator activity, RNA polymerase II proximal promoter sequence-specific DNA binding synonym
transcriptional activator activity, RNA polymerase II distal enhancer sequence-specific DNA binding synonym
zinc ion regulated core promoter proximal region sequence-specific DNA binding RNA polymerase II transcription factor activity involved in positive regulation of transcription synonym
transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific DNA binding synonym
GO:0001205 alt_id
GO:0001077 alt_id
GO:0001211 alt_id
GO:0001209 alt_id
GO:0001213 alt_id
GO:0001212 alt_id
distal enhancer DNA-binding transcription activator activity, RNA polymerase II-specific synonym
copper ion regulated core promoter proximal region sequence-specific DNA binding RNA polymerase II transcription factor activity involved in positive regulation of transcription synonym
metal ion regulated sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription synonym
metal ion regulated core promoter proximal region sequence-specific DNA binding RNA polymerase II transcription factor activity involved in positive regulation of transcription synonym