WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Phenotype : WBPhenotype:0000113 RNA expression variant

Description  Variations in the biogenesis and stability of any class of RNA molecules (rRNAs, miRNAs, tRNAs etc) compared to control.

9 RNAi

WormBase ID
WBRNAi00078433
WBRNAi00093719
WBRNAi00110148
WBRNAi00112043
WBRNAi00110151
WBRNAi00065388
WBRNAi00116040
WBRNAi00080913
WBRNAi00080912

1 RNAi Not Observed

WormBase ID
WBRNAi00110150

11 Children

Identifier Name Description
WBPhenotype:0001759 21U RNA expression variant Variations in the biogenesis or stability of the 21U-RNA class of molecules compared to control. Molecules are classified as 21U-RNA based on the presence of a 5'U and a conserved upstream motif, which may specify the production of these molecules, in addition these molecules are typically 21nt in length.
WBPhenotype:0000114 mRNA expression variant Variations in the biogenesis and stability of messenger RNA molecules compared to control.
WBPhenotype:0001779 miRNA expression variant Variations in the biogenesis or stability of the microRNA class of molecules compared to control. In C. elegans these molecules are endogenous single-stranded regulatory molecules, 19-25 nucleotides long, with the potential to arise from hairpin, foldback, structures from their primary transcripts.
WBPhenotype:0000028 RNA processing variant Variations in the processes involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules compared to control.
WBPhenotype:0001776 siRNA expression variant Variations in the biogenesis and stability of the small interfering class of RNA molecules compared to control. In C. elegans these molecules are antisense to mRNA's and may be processed from long double-stranded RNA.
WBPhenotype:0001777 pre mRNA levels increased Animals exhibit an increase in the levels of nuclear mRNA species compared to control.
WBPhenotype:0002147 small RNA somatic expression variant Animals exhibit variations from controls in the expression, biogenesis, processing, or stability of any class of small RNA species in somatic cells. Small RNAs include microRNAs (miRNAs), tiny noncoding RNAs (tncRNAs), cluster of small X-chromosome derived RNAs (X cluster), and endogenous short interfering RNA (endo-siRNAs).
WBPhenotype:0002146 small RNA germline expression variant Animals exhibit variations from controls in the expression, biogenesis, processing, or stability of any class of small RNA species in the germline. Small RNAs include microRNAs (miRNAs), tiny noncoding RNAs (tncRNAs), cluster of small X-chromosome derived RNAs (X cluster), and endogenous short interfering RNA (endo-siRNAs).
WBPhenotype:0002253 22G RNA expression reduced Animals exhibit lowered levels of any or all of the clades of 22G RNA molecules, compared to control.
WBPhenotype:0002149 X cluster small RNA expression variant Animals exhibit variations from controls in the expression, biogenesis, processing, or stability of the small X-chromosome derived RNAs (X cluster) species of small RNA.
WBPhenotype:0002664 RNA subcellular localization variant Any variation in the placement of RNA within in a cell or cellular compartment compared to control.

1 Data Sets

Name URL
WormBaseAcedbConverter  

1 Parents

Identifier Name Description
WBPhenotype:0000717 gene expression variant Variations in the processes that convert a gene's sequence into a mature gene product or products (proteins or RNA), compared to control.

13 Phenotype Allele

Public Name
e912
tm872
hc17
mg366
e2141
vr6
n179
n355
n137n460
ma422ma423
ma403
pk1426
y9

6 Phenotype Allele Not Observed

Public Name
q20
n179
e1865
tm1094
y70
tm1897

1 Synonyms

Name Type
RNA expression abnormal