WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

GO Term : GO:0090390 phagosome acidification involved in apoptotic cell clearance GO

Namespace  biological_process Obsolete  false
Description  Any process that reduces the pH of the phagosome, measured by the concentration of the hydrogen ion, and occurs as a part of apoptotic cell clearance.

0 Cross References

1 Data Sets

Name URL
GO Annotation data set  

1 Ontology

Name
GO

4 Ontology Annotations

Annotation Extension Qualifier
  involved_in
  involved_in
  involved_in
  involved_in

31 Parents

Identifier Name Description
GO:0006996 organelle organization A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of an organelle within a cell. An organelle is an organized structure of distinctive morphology and function. Includes the nucleus, mitochondria, plastids, vacuoles, vesicles, ribosomes and the cytoskeleton. Excludes the plasma membrane.
GO:0009987 cellular process Any process that is carried out at the cellular level, but not necessarily restricted to a single cell. For example, cell communication occurs among more than one cell, but occurs at the cellular level.
GO:0051179 localization Any process in which a cell, a substance, or a cellular entity, such as a protein complex or organelle, is transported, tethered to or otherwise maintained in a specific location. In the case of substances, localization may also be achieved via selective degradation.
GO:0008150 biological_process A biological process is the execution of a genetically-encoded biological module or program. It consists of all the steps required to achieve the specific biological objective of the module. A biological process is accomplished by a particular set of molecular functions carried out by specific gene products (or macromolecular complexes), often in a highly regulated manner and in a particular temporal sequence.
GO:0071840 cellular component organization or biogenesis A process that results in the biosynthesis of constituent macromolecules, assembly, arrangement of constituent parts, or disassembly of a cellular component.
GO:0016043 cellular component organization A process that results in the assembly, arrangement of constituent parts, or disassembly of a cellular component.
GO:0051234 establishment of localization Any process that localizes a substance or cellular component. This may occur via movement, tethering or selective degradation.
GO:0006810 transport The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter or a transporter complex, a pore or a motor protein.
GO:0065007 biological regulation Any process that modulates a measurable attribute of any biological process, quality or function.
GO:0065008 regulation of biological quality Any process that modulates a qualitative or quantitative trait of a biological quality. A biological quality is a measurable attribute of an organism or part of an organism, such as size, mass, shape, color, etc.
GO:0016192 vesicle-mediated transport A cellular transport process in which transported substances are moved in membrane-bounded vesicles; transported substances are enclosed in the vesicle lumen or located in the vesicle membrane. The process begins with a step that directs a substance to the forming vesicle, and includes vesicle budding and coating. Vesicles are then targeted to, and fuse with, an acceptor membrane.
GO:0055082 intracellular chemical homeostasis A homeostatic process involved in the maintenance of a steady state level of a chemical within a cell.
GO:0048878 chemical homeostasis Any biological process involved in the maintenance of an internal steady state of a chemical.
GO:0019725 cellular homeostasis Any process involved in the maintenance of an internal steady state at the level of the cell.
GO:0042592 homeostatic process Any biological process involved in the maintenance of an internal steady state.
GO:0098657 import into cell The directed movement of some substance from outside of a cell into a cell. This may occur via transport across the plasma membrane or via endocytosis.
GO:0006909 phagocytosis A vesicle-mediated transport process that results in the engulfment of external particulate material by phagocytes and their delivery to the lysosome. The particles are initially contained within phagocytic vacuoles (phagosomes), which then fuse with primary lysosomes to effect digestion of the particles.
GO:0090382 phagosome maturation A process that is carried out at the cellular level which results in the arrangement of constituent parts of a phagosome within a cell. Phagosome maturation begins with endocytosis and formation of the early phagosome and ends with the formation of the hybrid organelle, the phagolysosome.
GO:0006897 endocytosis A vesicle-mediated transport process in which cells take up external materials or membrane constituents by the invagination of a part of the plasma membrane to form a new membrane-bounded vesicle.
GO:0006873 intracellular monoatomic ion homeostasis A homeostatic process involved in the maintenance of a steady state level of monoatomic ions within a cell. Monatomic ions (also called simple ions) are ions consisting of exactly one atom.
GO:0050801 monoatomic ion homeostasis Any process involved in the maintenance of an internal steady state of monoatomic ions within an organism or cell. Monatomic ions (also called simple ions) are ions consisting of exactly one atom.
GO:0030003 intracellular monoatomic cation homeostasis A homeostatic process involved in the maintenance of a steady state level of monoatomic cations within a cell. Monatomic cations (also called simple cations) are cations consisting of exactly one atom.
GO:0055080 monoatomic cation homeostasis Any process involved in the maintenance of an internal steady state of monoatomic cations within an organism or cell. Monatomic cations (also called simple cations) are cations consisting of exactly one atom.
GO:0006885 regulation of pH Any process involved in the maintenance of an internal equilibrium of hydrogen ions, thereby modulating the internal pH, within an organism or cell.
GO:0051452 intracellular pH reduction Any process that reduces the internal pH of a cell, measured by the concentration of the hydrogen ion.
GO:0030641 regulation of cellular pH Any process involved in the maintenance of an internal equilibrium of hydrogen ions (protons) within a cell or between a cell and its external environment.
GO:0051453 regulation of intracellular pH Any process that modulates the internal pH of a cell, measured by the concentration of the hydrogen ion.
GO:0043277 apoptotic cell clearance The recognition and removal of an apoptotic cell by a neighboring cell or by a phagocyte.
GO:0090383 phagosome acidification Any process that reduces the pH of the phagosome, measured by the concentration of the hydrogen ion.
GO:0090386 phagosome maturation involved in apoptotic cell clearance A process that is carried out at the cellular level which results in the arrangement of constituent parts of a phagosome within a cell and contributes to apoptotic cell clearance. Phagosome maturation begins with endocytosis and formation of the early phagosome and ends with the formation of the hybrid organelle, the phagolysosome.

33 Relations

Relationship
Parent Term . Identifier

Child Term . Identifier
is_a GO:0090383 GO:0090390
is_a GO:0090383 GO:0090390
part of GO:0090386 GO:0090390
part of GO:0090386 GO:0090390
is_a GO:0042592 GO:0090390
is_a GO:0048878 GO:0090390
part of GO:0008150 GO:0090390
part of GO:0090382 GO:0090390
part of GO:0043277 GO:0090390
part of GO:0071840 GO:0090390
part of GO:0006909 GO:0090390
is_a GO:0006873 GO:0090390
is_a GO:0055082 GO:0090390
part of GO:0016043 GO:0090390
is_a GO:0055080 GO:0090390
is_a GO:0008150 GO:0090390
is_a GO:0050801 GO:0090390
is_a GO:0051453 GO:0090390
part of GO:0051234 GO:0090390
part of GO:0051179 GO:0090390
is_a GO:0051452 GO:0090390
is_a GO:0065008 GO:0090390
is_a GO:0030641 GO:0090390
is_a GO:0030003 GO:0090390
part of GO:0098657 GO:0090390
is_a GO:0006885 GO:0090390
is_a GO:0019725 GO:0090390
is_a GO:0065007 GO:0090390
part of GO:0016192 GO:0090390
part of GO:0006810 GO:0090390

0 Synonyms