WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

GO Term : GO:0140078 class I DNA-(apurinic or apyrimidinic site) endonuclease activity GO

Namespace  molecular_function Obsolete  false
Description  Catalysis of the cleavage of an AP site 3' of the baseless site by a beta-lyase mechanism, leaving an unsaturated aldehyde, termed a 3'-(4-hydroxy-5-phospho-2-pentenal) residue, and a 5'-phosphate.

0 Cross References

1 Data Sets

Name URL
GO Annotation data set  

1 Ontology

Name
GO

2 Ontology Annotations

Annotation Extension Qualifier
  enables
  enables

8 Parents

Identifier Name Description
GO:0003674 molecular_function A molecular process that can be carried out by the action of a single macromolecular machine, usually via direct physical interactions with other molecular entities. Function in this sense denotes an action, or activity, that a gene product (or a complex) performs.
GO:0003824 catalytic activity Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
GO:0140640 catalytic activity, acting on a nucleic acid Catalytic activity that acts to modify a nucleic acid.
GO:0140097 catalytic activity, acting on DNA Catalytic activity that acts to modify DNA.
GO:0016829 lyase activity Catalysis of the cleavage of C-C, C-O, C-N and other bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond. They differ from other enzymes in that two substrates are involved in one reaction direction, but only one in the other direction. When acting on the single substrate, a molecule is eliminated and this generates either a new double bond or a new ring.
GO:0016835 carbon-oxygen lyase activity Catalysis of the breakage of a carbon-oxygen bond.
GO:0003906 DNA-(apurinic or apyrimidinic site) endonuclease activity Catalysis of the cleavage of the C-O-P bond in the AP site created when DNA glycosylase removes a damaged base, involved in the DNA base excision repair pathway (BER).
GO:0140078 class I DNA-(apurinic or apyrimidinic site) endonuclease activity Catalysis of the cleavage of an AP site 3' of the baseless site by a beta-lyase mechanism, leaving an unsaturated aldehyde, termed a 3'-(4-hydroxy-5-phospho-2-pentenal) residue, and a 5'-phosphate.

7 Relations

Relationship
Parent Term . Identifier

Child Term . Identifier
is_a GO:0003906 GO:0140078
is_a GO:0016835 GO:0140078
is_a GO:0003824 GO:0140078
is_a GO:0140097 GO:0140078
is_a GO:0003674 GO:0140078
is_a GO:0140640 GO:0140078
is_a GO:0016829 GO:0140078

7 Synonyms

Name Type
AP endonuclease class I activity synonym
AP lyase activity synonym
AP site-DNA 5'-phosphomonoester-lyase activity synonym
class I AP endonuclease activity synonym
class I DNA-(apurinic or apyrimidinic site) lyase activity synonym
DNA-(apurinic or apyrimidinic site) 5'-phosphomonoester-lyase activity synonym
DNA-(apurinic or apyrimidinic site) lyase activity synonym