WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

GO Term : GO:0140809 histone H4R3 arginine deiminase activity GO

Namespace  molecular_function Obsolete  false
Description  Catalysis of the reaction: H2O + histone H4 L-arginyl (position 3)= histone H4 L-citrullyl (position 3) + NH4+, resulting in histone H4 citrullination at position 3.

0 Cross References

0 Data Sets

1 Ontology

Name
GO

0 Ontology Annotations

16 Parents

Identifier Name Description
GO:0009987 cellular process Any process that is carried out at the cellular level, but not necessarily restricted to a single cell. For example, cell communication occurs among more than one cell, but occurs at the cellular level.
GO:0008150 biological_process A biological process is the execution of a genetically-encoded biological module or program. It consists of all the steps required to achieve the specific biological objective of the module. A biological process is accomplished by a particular set of molecular functions carried out by specific gene products (or macromolecular complexes), often in a highly regulated manner and in a particular temporal sequence.
GO:0071840 cellular component organization or biogenesis A process that results in the biosynthesis of constituent macromolecules, assembly, arrangement of constituent parts, or disassembly of a cellular component.
GO:0016043 cellular component organization A process that results in the assembly, arrangement of constituent parts, or disassembly of a cellular component.
GO:0003674 molecular_function A molecular process that can be carried out by the action of a single macromolecular machine, usually via direct physical interactions with other molecular entities. Function in this sense denotes an action, or activity, that a gene product (or a complex) performs.
GO:0003824 catalytic activity Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
GO:0016787 hydrolase activity Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc.
GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds Catalysis of the hydrolysis of any carbon-nitrogen bond, C-N, with the exception of peptide bonds.
GO:0140096 catalytic activity, acting on a protein Catalytic activity that acts to modify a protein.
GO:0006325 chromatin organization The assembly or remodeling of chromatin composed of DNA complexed with histones, other associated proteins, and sometimes RNA.
GO:0006338 chromatin remodeling A dynamic process of chromatin reorganization resulting in changes to chromatin structure. These changes allow DNA metabolic processes such as transcriptional regulation, DNA recombination, DNA repair, and DNA replication.
GO:0016813 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines Catalysis of the hydrolysis of any non-peptide carbon-nitrogen bond in a linear amidine, a compound of the form R-C(=NH)-NH2.
GO:0140993 histone modifying activity A catalytic activity that acts on a histone protein. Reversible histone modifications contribute to regulation of gene expression.
GO:0004668 protein-arginine deiminase activity Catalysis of the reaction: H2O + L-arginyl-[protein] = L-citrullyl-[protein] + NH4+, resulting in citrullination of the target protein. This reaction is calcium-dependent.
GO:0140794 histone arginine deiminase activity Catalysis of the reaction: H2O + histone 3 L-arginyl = histone 3 L-citrullyl + NH4+, resulting in histone citrullination.
GO:0140809 histone H4R3 arginine deiminase activity Catalysis of the reaction: H2O + histone H4 L-arginyl (position 3)= histone H4 L-citrullyl (position 3) + NH4+, resulting in histone H4 citrullination at position 3.

15 Relations

Relationship
Parent Term . Identifier

Child Term . Identifier
is_a GO:0140794 GO:0140809
is_a GO:0003824 GO:0140809
is_a GO:0004668 GO:0140809
is_a GO:0003674 GO:0140809
part of GO:0008150 GO:0140809
is_a GO:0016813 GO:0140809
part of GO:0071840 GO:0140809
is_a GO:0140096 GO:0140809
is_a GO:0140993 GO:0140809
is_a GO:0016787 GO:0140809
part of GO:0016043 GO:0140809
is_a GO:0016810 GO:0140809
part of GO:0006325 GO:0140809
part of GO:0006338 GO:0140809
part of GO:0009987 GO:0140809

3 Synonyms

Name Type
H4-R3 citrullination synonym
histone H4-R3 arginine deiminase activity synonym
histone-arginine deiminase activity (H4-R3 specific) synonym