WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Expression Pattern :

Pattern  Fluorescence was detected in the hypodermal cells as early as the comma stage and throughout all the larval stages in the body hypodermis with the exclusion of seam cells. At the late L3 to L4 stages when ray cell differentiation took place, no dpy-11 promoter driven GFP signal was detected in the ray precursor (Rn) cells. Neither was there any signal detected in cells of the Rn.a branch differentiating into future neuronal derivatives. GFP signal was observed only in the Rn.p cells after they were born. Primary Identifier  Expr1854
Remark  Reporter gene fusion type not specified.

10 Anatomy Terms

Definition Name Synonym Primary Identifier
Epidermal layer. hypodermis epidermis WBbt:0005733
Male sensory ray 9 hypodermal cell, fuses with hypodermal syncytium R9_hyp lineage name: T.appapp, R9.p WBbt:0004789
Male sensory ray 6 hypodermal cell, fuses with hypodermal syncytium R6_hyp lineage name: V6.pppppp, R6.p WBbt:0004792
Male sensory ray 5 hypodermal cell, fuses with other ray hypodermal cells to form the tail seam R5_hyp lineage name: V6.ppppap, R5.p WBbt:0004793
Male sensory ray 8 hypodermal cell, fuses with hypodermal syncytium R8_hyp lineage name: T.appaap, R8.p WBbt:0004790
Male sensory ray 7 hypodermal cell, fuses with hypodermal syncytium R7_hyp lineage name: T.apappp, R7.p WBbt:0004791
Ray 2 hypodermal cell, fuses with other ray hypodermal cells to form the tail seam R2_hyp lineage name: V6.papapp, R2.p WBbt:0004796
Male sensory ray 4 hypodermal cell, fuses with other ray hypodermal cells to form the tail seam R4_hyp lineage name: V6.pppapp, R4.p WBbt:0004794
Male sensory ray 3 hypodermal cell, fuses with other ray hypodermal cells to form the tail seam R3_hyp lineage name: V6.papppp, R3.p WBbt:0004795
Ray 1 hypodermal cell, fuses with other ray hypodermal cells to form the tail seam. R1_hyp lineage name: V5.pppppp, R1.p WBbt:0004807

1 Genes

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00001073 dpy-11 F46E10.9 Caenorhabditis elegans

9 Life Stages

Remark Definition Other Name Public Name Primary Identifier
  The third stage larva. At 25 Centigrade, it ranges 32.5-40 hours after fertilization, 18.5-26 hours after hatch. L3 larva Ce WBls:0000035
  The second stage larva. At 25 Centigrade, it ranges 25.5-32.5 hours after fertilization, 11.5-18.5 hours after hatch. L2 larva Ce WBls:0000027
  The fourth stage larva. At 25 Centigrade, it ranges 40-49.5 hours after fertilization, 26-35.5 hours after hatch. L4 larva Ce WBls:0000038
  The first stage larva. At 25 Centigrade, it ranges 14-25.5 hours after fertilization, 0-11.5 hours after hatch. L1 larva Ce WBls:0000024
  The C. elegans life stage spanning 620-800min(hatch) after first cleavage at 20 Centigrade. Cell number remains at ~560 cells, with some new cells generated and some cells go through programmed cell death. A stage after elongation is over. The last stage of embryogenesis. Also called pre-hatched embryo, late embryo or morphogenetic embryo. fully-elongated embryo Ce WBls:0000021
  The C. elegans life stage spanning 390-420min after first cleavage at 20 Centigrade. Cell number remains at ~560 cells, with some new cells generated and some cells go through programmed cell death. The shape of embryo looks like a comma. A stage between bean embryo and 1.5-fold embryo. comma embryo Ce WBls:0000017
  The C. elegans life stage spanning 460-520min after first cleavage at 20 Centigrade. Cell number remains at ~560 cells, with some new cells generated and some cells go through programmed cell death. The shape of embryo is elongated and double fold. A stage between 1.5-fold embryo and 3-fold embryo. 2-fold embryo Ce WBls:0000019
  The C. elegans life stage spanning 520-620min after first cleavage at 20 Centigrade. Cell number remains at ~560 cells, with some new cells generated and some cells go through programmed cell death. The shape of embryo is elongated and tripple fold. A stage between 2-fold embryo and fully-elongated embryo. Also called pretzel embryo or pretzel stage. 3-fold embryo Ce WBls:0000020
  The C. elegans life stage spanning 420-460min after first cleavage at 20 Centigrade. Cell number remains at ~560 cells, with some new cells generated and some cells go through programmed cell death. The shape of embryo is elongated and fold back 50%. A stage between comma embryo and 2-fold embryo. 1.5-fold embryo Ce WBls:0000018