WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Expression Pattern :

Pattern  Inferred expression. EPIC dataset. http://epic.gs.washington.edu/ Large-scale cellular resolution compendium of gene expression dynamics throughout development. This reporter was inferred to be expressing in this cell or one of its embryonic progenitor cells as described below. To generate a compact description of which cells express a particular reporter irrespective of time, the authors defined a metric "peak expression" for each of the 671 terminal ("leaf") cells born during embryogenesis. For each of these cells, the peak expression is the maximal reporter intensity observed in that cell or any of its ancestors; this has the effect of transposing earlier expression forward in time to the terminal set of cells. This metric allows straightforward comparisons of genes' cellular and lineal expression overlap, even when the expression occurs with different timing and despite differences in the precise time point that curation ended in different movies, at the cost of ignoring the temporal dynamics of expression, a topic that requires separate treatment. For simplicity, the authors use the term "expressing cells" to mean the number of leaf cells (of 671) with peak expression greater than background (2000 intensity units) and at least 10% of the maximum expression in that embryo. Quantitative expression data for all cells are located here: ftp://caltech.wormbase.org/pub/wormbase/datasets-published/murray2012/ Primary Identifier  Expr10312
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166 Anatomy Terms

Definition Name Synonym Primary Identifier
embryonic cell ABplapapaa QV5L WBbt:0006017
Postembryonic blast cells for ventral cord motorneurons, ventral hypodermis, vulva, male preanal ganglion; ventral hypodermis in L1 P11 lineage name: ABplapappa WBbt:0004410
Seam hypodermal cell, postembryonic blast cell H1L lineage name: ABplaaappp WBbt:0004766
Seam hypodermal cell H0L lineage name: ABplaaappa WBbt:0004778
Embryonic head hypodermal cell XXXL lineage name: ABplaaapaa WBbt:0004581
Tail seam hypodermal cell, postembryonic blast cell, functions as phasmid socket in L1 TL lineage name: ABplappppp WBbt:0004946
Seam hypodermal cell, postembryonic blast cell V6L lineage name: ABarppappp WBbt:0004875
Seam hypodermal cell, postembryonic blast cell V3R lineage name: ABprappapa WBbt:0004896
Seam hypodermal cell, postembryonic blast cell V3L lineage name: ABplappapa WBbt:0004898
embryonic cell ABalaappaa   WBbt:0006065
embryonic cell ABalaappap   WBbt:0006287
embryonic cell ABalpaaap   WBbt:0005850
embryonic cell ABalpappa   WBbt:0005924
embryonic cell ABplpapaa   WBbt:0005955
embryonic cell ABaraapap   WBbt:0006006
embryonic cell ABpraappa   WBbt:0006035
embryonic cell ABalppaap   WBbt:0006020
embryonic cell ABprpaapa   WBbt:0006047
embryonic cell ABprpappa   WBbt:0006088
embryonic cell ABaraaaaa   WBbt:0006135
embryonic cell ABalppaaa   WBbt:0006129
embryonic cell ABaraaapp   WBbt:0006189
embryonic cell ABalpaaaa   WBbt:0006198
embryonic cell ABprpaaaa   WBbt:0006278
embryonic cell ABaraaaap   WBbt:0006311
embryonic cell ABprpapaa   WBbt:0006446
embryonic cell ABprpaaap   WBbt:0006490
embryonic cell ABprpaapp   WBbt:0006605
embryonic cell ABaraapaa   WBbt:0006654
embryonic cell ABalpaapap   WBbt:0006606

1 Genes

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00017755 zip-8 F23F12.9 Caenorhabditis elegans

364 Life Stages

Remark Definition Other Name Public Name Primary Identifier
  The time period encompassing the 202nd minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 202 min post first-cleavage Ce WBls:0000313
  The time period encompassing the 201st minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 201 min post first-cleavage Ce WBls:0000312
  The time period encompassing the 200th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 200 min post first-cleavage Ce WBls:0000311
  The time period encompassing the 199th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 199 min post first-cleavage Ce WBls:0000310
  The time period encompassing the 206th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 206 min post first-cleavage Ce WBls:0000317
  The time period encompassing the 205th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 205 min post first-cleavage Ce WBls:0000316
  The time period encompassing the 204th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 204 min post first-cleavage Ce WBls:0000315
  The time period encompassing the 203rd minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 203 min post first-cleavage Ce WBls:0000314
  The time period encompassing the 210th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 210 min post first-cleavage Ce WBls:0000321
  The time period encompassing the 209th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 209 min post first-cleavage Ce WBls:0000320
  The time period encompassing the 208th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 208 min post first-cleavage Ce WBls:0000319
  The time period encompassing the 207th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 207 min post first-cleavage Ce WBls:0000318
  The time period encompassing the 214th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 214 min post first-cleavage Ce WBls:0000325
  The time period encompassing the 213rd minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 213 min post first-cleavage Ce WBls:0000324
  The time period encompassing the 212nd minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 212 min post first-cleavage Ce WBls:0000323
  The time period encompassing the 211st minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 211 min post first-cleavage Ce WBls:0000322
  The time period encompassing the 218th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 218 min post first-cleavage Ce WBls:0000329
  The time period encompassing the 217th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 217 min post first-cleavage Ce WBls:0000328
  The time period encompassing the 216th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 216 min post first-cleavage Ce WBls:0000327
  The time period encompassing the 215th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 215 min post first-cleavage Ce WBls:0000326
  The time period encompassing the 222nd minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 222 min post first-cleavage Ce WBls:0000333
  The time period encompassing the 221st minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 221 min post first-cleavage Ce WBls:0000332
  The time period encompassing the 220th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 220 min post first-cleavage Ce WBls:0000331
  The time period encompassing the 219th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 219 min post first-cleavage Ce WBls:0000330
  The time period encompassing the 226th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 226 min post first-cleavage Ce WBls:0000337
  The time period encompassing the 225th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 225 min post first-cleavage Ce WBls:0000336
  The time period encompassing the 224th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 224 min post first-cleavage Ce WBls:0000335
  The time period encompassing the 223rd minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 223 min post first-cleavage Ce WBls:0000334
  The time period encompassing the 230th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 230 min post first-cleavage Ce WBls:0000341
  The time period encompassing the 229th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 229 min post first-cleavage Ce WBls:0000340