WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Expression Pattern :

Pattern  Inferred expression. EPIC dataset. http://epic.gs.washington.edu/ Large-scale cellular resolution compendium of gene expression dynamics throughout development. This reporter was inferred to be expressing in this cell or one of its embryonic progenitor cells as described below. To generate a compact description of which cells express a particular reporter irrespective of time, the authors defined a metric "peak expression" for each of the 671 terminal ("leaf") cells born during embryogenesis. For each of these cells, the peak expression is the maximal reporter intensity observed in that cell or any of its ancestors; this has the effect of transposing earlier expression forward in time to the terminal set of cells. This metric allows straightforward comparisons of genes' cellular and lineal expression overlap, even when the expression occurs with different timing and despite differences in the precise time point that curation ended in different movies, at the cost of ignoring the temporal dynamics of expression, a topic that requires separate treatment. For simplicity, the authors use the term "expressing cells" to mean the number of leaf cells (of 671) with peak expression greater than background (2000 intensity units) and at least 10% of the maximum expression in that embryo. Quantitative expression data for all cells are located here: ftp://caltech.wormbase.org/pub/wormbase/datasets-published/murray2012/ Primary Identifier  Expr10328
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22 Anatomy Terms

Definition Name Synonym Primary Identifier
embryonic cell ABplaaa   WBbt:0005905
embryonic cell ABalpap   WBbt:0005949
embryonic cell ABalppp   WBbt:0006048
embryonic cell ABplpap   WBbt:0006152
embryonic cell Dap   WBbt:0006210
embryonic cell ABpraaa   WBbt:0006228
embryonic cell ABaraap   WBbt:0006272
embryonic cell Daa   WBbt:0006289
embryonic cell ABalpaa   WBbt:0006338
embryonic cell ABplaap   WBbt:0006410
embryonic cell ABpraap   WBbt:0006548
embryonic cell ABplpaa   WBbt:0006643
embryonic cell ABaraaa   WBbt:0006691
embryonic cell ABalppa   WBbt:0006741
embryonic cell ABplapa   WBbt:0005879
embryonic cell ABprapp   WBbt:0005880
embryonic cell ABplapp   WBbt:0005936
embryonic cell ABarapp   WBbt:0006192
embryonic cell ABprapa   WBbt:0006367
embryonic cell ABarapa   WBbt:0006328
embryonic cell ABplppa   WBbt:0006579
embryonic cell ABplppp   WBbt:0006669

1 Genes

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00001965 hlh-26 C17C3.8 Caenorhabditis elegans

54 Life Stages

Remark Definition Other Name Public Name Primary Identifier
  The time period encompassing the 126th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 126 min post first-cleavage Ce WBls:0000237
  The time period encompassing the 130th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 130 min post first-cleavage Ce WBls:0000241
  The time period encompassing the 129th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 129 min post first-cleavage Ce WBls:0000240
  The time period encompassing the 128th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 128 min post first-cleavage Ce WBls:0000239
  The time period encompassing the 127th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 127 min post first-cleavage Ce WBls:0000238
  The time period encompassing the 133rd minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 133 min post first-cleavage Ce WBls:0000244
  The time period encompassing the 132nd minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 132 min post first-cleavage Ce WBls:0000243
  The time period encompassing the 131st minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 131 min post first-cleavage Ce WBls:0000242
  The time period encompassing the 202nd minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 202 min post first-cleavage Ce WBls:0000313
  The time period encompassing the 201st minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 201 min post first-cleavage Ce WBls:0000312
  The time period encompassing the 200th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 200 min post first-cleavage Ce WBls:0000311
  The time period encompassing the 199th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 199 min post first-cleavage Ce WBls:0000310
  The time period encompassing the 206th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 206 min post first-cleavage Ce WBls:0000317
  The time period encompassing the 205th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 205 min post first-cleavage Ce WBls:0000316
  The time period encompassing the 204th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 204 min post first-cleavage Ce WBls:0000315
  The time period encompassing the 203rd minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 203 min post first-cleavage Ce WBls:0000314
  The time period encompassing the 210th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 210 min post first-cleavage Ce WBls:0000321
  The time period encompassing the 209th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 209 min post first-cleavage Ce WBls:0000320
  The time period encompassing the 208th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 208 min post first-cleavage Ce WBls:0000319
  The time period encompassing the 207th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 207 min post first-cleavage Ce WBls:0000318
  The time period encompassing the 178th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 178 min post first-cleavage Ce WBls:0000289
  The time period encompassing the 177th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 177 min post first-cleavage Ce WBls:0000288
  The time period encompassing the 182nd minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 182 min post first-cleavage Ce WBls:0000293
  The time period encompassing the 181st minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 181 min post first-cleavage Ce WBls:0000292
  The time period encompassing the 180th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 180 min post first-cleavage Ce WBls:0000291
  The time period encompassing the 179th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 179 min post first-cleavage Ce WBls:0000290
  The time period encompassing the 186th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 186 min post first-cleavage Ce WBls:0000297
  The time period encompassing the 185th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 185 min post first-cleavage Ce WBls:0000296
  The time period encompassing the 184th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 184 min post first-cleavage Ce WBls:0000295
  The time period encompassing the 183rd minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 183 min post first-cleavage Ce WBls:0000294