WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Expression Pattern :

Pattern  Inferred Expression. EPIC dataset. http://epic.gs.washington.edu/ Large-scale cellular resolution compendium of gene expression dynamics throughout development. This reporter was inferred to be expressing in this cell or one of its embryonic progenitor cells as described below. To generate a compact description of which cells express a particular reporter irrespective of time, the authors defined a metric "peak expression" for each of the 671 terminal ("leaf") cells born during embryogenesis. For each of these cells, the peak expression is the maximal reporter intensity observed in that cell or any of its ancestors; this has the effect of transposing earlier expression forward in time to the terminal set of cells. This metric allows straightforward comparisons of genes' cellular and lineal expression overlap, even when the expression occurs with different timing and despite differences in the precise time point that curation ended in different movies, at the cost of ignoring the temporal dynamics of expression, a topic that requires separate treatment. For simplicity, the authors use the term "expressing cells" to mean the number of leaf cells (of 671) with peak expression greater than background (2000 intensity units) and at least 10% of the maximum expression in that embryo. Quantitative expression data for all cells are located here: ftp://caltech.wormbase.org/pub/wormbase/datasets-published/murray2012/ Primary Identifier  Expr10454
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18 Anatomy Terms

Definition Name Synonym Primary Identifier
embryonic cell ABplpapaa   WBbt:0005955
embryonic cell ABalpap   WBbt:0005949
embryonic cell ABalppp   WBbt:0006048
embryonic cell ABaraap   WBbt:0006272
embryonic cell ABalpaa   WBbt:0006338
embryonic cell ABaraaa   WBbt:0006691
embryonic cell ABplaaapa   WBbt:0006680
embryonic cell ABalppa   WBbt:0006741
embryonic cell ABalapp   WBbt:0005946
embryonic cell ABalaap   WBbt:0005907
embryonic cell ABarapp   WBbt:0006192
embryonic cell ABarppa   WBbt:0006250
embryonic cell ABalaaa   WBbt:0006216
embryonic cell ABarpaa   WBbt:0006276
embryonic cell ABarapa   WBbt:0006328
embryonic cell ABarpap   WBbt:0006389
embryonic cell ABarppp   WBbt:0006501
embryonic cell ABalapa   WBbt:0006652

1 Genes

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00006557 tbx-38 C24H11.3 Caenorhabditis elegans

100 Life Stages

Remark Definition Other Name Public Name Primary Identifier
  The time period encompassing the 126th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 126 min post first-cleavage Ce WBls:0000237
  The time period encompassing the 130th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 130 min post first-cleavage Ce WBls:0000241
  The time period encompassing the 129th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 129 min post first-cleavage Ce WBls:0000240
  The time period encompassing the 128th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 128 min post first-cleavage Ce WBls:0000239
  The time period encompassing the 127th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 127 min post first-cleavage Ce WBls:0000238
  The time period encompassing the 133rd minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 133 min post first-cleavage Ce WBls:0000244
  The time period encompassing the 132nd minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 132 min post first-cleavage Ce WBls:0000243
  The time period encompassing the 131st minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 131 min post first-cleavage Ce WBls:0000242
  The time period encompassing the 202nd minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 202 min post first-cleavage Ce WBls:0000313
  The time period encompassing the 201st minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 201 min post first-cleavage Ce WBls:0000312
  The time period encompassing the 200th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 200 min post first-cleavage Ce WBls:0000311
  The time period encompassing the 199th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 199 min post first-cleavage Ce WBls:0000310
  The time period encompassing the 206th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 206 min post first-cleavage Ce WBls:0000317
  The time period encompassing the 205th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 205 min post first-cleavage Ce WBls:0000316
  The time period encompassing the 204th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 204 min post first-cleavage Ce WBls:0000315
  The time period encompassing the 203rd minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 203 min post first-cleavage Ce WBls:0000314
  The time period encompassing the 210th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 210 min post first-cleavage Ce WBls:0000321
  The time period encompassing the 209th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 209 min post first-cleavage Ce WBls:0000320
  The time period encompassing the 208th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 208 min post first-cleavage Ce WBls:0000319
  The time period encompassing the 207th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 207 min post first-cleavage Ce WBls:0000318
  The time period encompassing the 214th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 214 min post first-cleavage Ce WBls:0000325
  The time period encompassing the 213rd minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 213 min post first-cleavage Ce WBls:0000324
  The time period encompassing the 212nd minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 212 min post first-cleavage Ce WBls:0000323
  The time period encompassing the 211st minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 211 min post first-cleavage Ce WBls:0000322
  The time period encompassing the 218th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 218 min post first-cleavage Ce WBls:0000329
  The time period encompassing the 217th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 217 min post first-cleavage Ce WBls:0000328
  The time period encompassing the 216th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 216 min post first-cleavage Ce WBls:0000327
  The time period encompassing the 215th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 215 min post first-cleavage Ce WBls:0000326
  The time period encompassing the 222nd minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 222 min post first-cleavage Ce WBls:0000333
  The time period encompassing the 221st minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 221 min post first-cleavage Ce WBls:0000332