WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Expression Pattern :

Pattern  Inferred expression. EPIC dataset. http://epic.gs.washington.edu/ Large-scale cellular resolution compendium of gene expression dynamics throughout development. This reporter was inferred to be expressing in this cell or one of its embryonic progenitor cells as described below. To generate a compact description of which cells express a particular reporter irrespective of time, the authors defined a metric "peak expression" for each of the 671 terminal ("leaf") cells born during embryogenesis. For each of these cells, the peak expression is the maximal reporter intensity observed in that cell or any of its ancestors; this has the effect of transposing earlier expression forward in time to the terminal set of cells. This metric allows straightforward comparisons of genes' cellular and lineal expression overlap, even when the expression occurs with different timing and despite differences in the precise time point that curation ended in different movies, at the cost of ignoring the temporal dynamics of expression, a topic that requires separate treatment. For simplicity, the authors use the term "expressing cells" to mean the number of leaf cells (of 671) with peak expression greater than background (2000 intensity units) and at least 10% of the maximum expression in that embryo. Quantitative expression data for all cells are located here: ftp://caltech.wormbase.org/pub/wormbase/datasets-published/murray2012/ Primary Identifier  Expr10227
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25 Anatomy Terms

Definition Name Synonym Primary Identifier
embryonic cell ABplapapaa QV5L WBbt:0006017
Seam hypodermal cell, postembryonic blast cell H1L lineage name: ABplaaappp WBbt:0004766
Seam hyopdermal cell, postemb. blast cell, L1 deirid socket H2L lineage name: ABarppaaap WBbt:0004764
Seam hyopdermal cell, postemb. blast cell, L1 deirid socket H2R lineage name: ABarpppaap WBbt:0004763
Seam hypodermal cell H0L lineage name: ABplaaappa WBbt:0004778
Anterior deirid sheath ADEshR lineage name: ABarpppaaa WBbt:0004004
Anterior deirid sheath ADEshL lineage name: ABarppaaaa WBbt:0004005
Seam hypodermal cell, postembryonic blast cell V1L lineage name: ABarppapaa WBbt:0004905
Seam hypodermal cell, postembryonic blast cell V1R lineage name: ABarppppaa WBbt:0004904
Seam hypodermal cell, postembryonic blast cell V2L lineage name: ABarppapap WBbt:0004902
Seam hypodermal cell, postembryonic blast cell V2R lineage name: ABarppppap WBbt:0004900
embryonic cell ABaraaapa   WBbt:0006585
embryonic cell ABplaaapa   WBbt:0006680
embryonic cell MSpapap   WBbt:0005968
embryonic cell MSaapaa   WBbt:0005902
embryonic cell MSaaaaa   WBbt:0006078
embryonic cell MSaaaap   WBbt:0006143
embryonic cell MSpapaa   WBbt:0006351
embryonic cell ABaraappaa   WBbt:0006636
Cell of lineage ABplapapap, born in embryo, one of a group of postembryonic blast cells for ventral cord motorneurons, ventral hypodermis, vulva, male preanal ganglion; ventral hypodermis in L1. P9/10L ABplapapap WBbt:0004412
embryonic cell ABaraapaap   WBbt:0006223
embryonic cell ABaraappap   WBbt:0006286
embryonic cell ABalpaapaa   WBbt:0006405
embryonic cell ABaraapaaa   WBbt:0006445
embryonic cell ABprapapa   WBbt:0006510

1 Genes

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000439 ceh-16 C13G5.1 Caenorhabditis elegans

370 Life Stages

Remark Definition Other Name Public Name Primary Identifier
  The time period encompassing the 202nd minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 202 min post first-cleavage Ce WBls:0000313
  The time period encompassing the 201st minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 201 min post first-cleavage Ce WBls:0000312
  The time period encompassing the 200th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 200 min post first-cleavage Ce WBls:0000311
  The time period encompassing the 199th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 199 min post first-cleavage Ce WBls:0000310
  The time period encompassing the 206th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 206 min post first-cleavage Ce WBls:0000317
  The time period encompassing the 205th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 205 min post first-cleavage Ce WBls:0000316
  The time period encompassing the 204th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 204 min post first-cleavage Ce WBls:0000315
  The time period encompassing the 203rd minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 203 min post first-cleavage Ce WBls:0000314
  The time period encompassing the 210th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 210 min post first-cleavage Ce WBls:0000321
  The time period encompassing the 209th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 209 min post first-cleavage Ce WBls:0000320
  The time period encompassing the 208th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 208 min post first-cleavage Ce WBls:0000319
  The time period encompassing the 207th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 207 min post first-cleavage Ce WBls:0000318
  The time period encompassing the 214th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 214 min post first-cleavage Ce WBls:0000325
  The time period encompassing the 213rd minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 213 min post first-cleavage Ce WBls:0000324
  The time period encompassing the 212nd minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 212 min post first-cleavage Ce WBls:0000323
  The time period encompassing the 211st minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 211 min post first-cleavage Ce WBls:0000322
  The time period encompassing the 218th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 218 min post first-cleavage Ce WBls:0000329
  The time period encompassing the 217th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 217 min post first-cleavage Ce WBls:0000328
  The time period encompassing the 216th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 216 min post first-cleavage Ce WBls:0000327
  The time period encompassing the 215th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 215 min post first-cleavage Ce WBls:0000326
  The time period encompassing the 222nd minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 222 min post first-cleavage Ce WBls:0000333
  The time period encompassing the 221st minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 221 min post first-cleavage Ce WBls:0000332
  The time period encompassing the 220th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 220 min post first-cleavage Ce WBls:0000331
  The time period encompassing the 219th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 219 min post first-cleavage Ce WBls:0000330
  The time period encompassing the 226th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 226 min post first-cleavage Ce WBls:0000337
  The time period encompassing the 225th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 225 min post first-cleavage Ce WBls:0000336
  The time period encompassing the 224th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 224 min post first-cleavage Ce WBls:0000335
  The time period encompassing the 223rd minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 223 min post first-cleavage Ce WBls:0000334
  The time period encompassing the 230th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 230 min post first-cleavage Ce WBls:0000341
  The time period encompassing the 229th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 229 min post first-cleavage Ce WBls:0000340