WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Expression Pattern :

Pattern  Inferred Expression. EPIC dataset. http://epic.gs.washington.edu/ Large-scale cellular resolution compendium of gene expression dynamics throughout development. This reporter was inferred to be expressing in this cell or one of its embryonic progenitor cells as described below. To generate a compact description of which cells express a particular reporter irrespective of time, the authors defined a metric "peak expression" for each of the 671 terminal ("leaf") cells born during embryogenesis. For each of these cells, the peak expression is the maximal reporter intensity observed in that cell or any of its ancestors; this has the effect of transposing earlier expression forward in time to the terminal set of cells. This metric allows straightforward comparisons of genes' cellular and lineal expression overlap, even when the expression occurs with different timing and despite differences in the precise time point that curation ended in different movies, at the cost of ignoring the temporal dynamics of expression, a topic that requires separate treatment. For simplicity, the authors use the term "expressing cells" to mean the number of leaf cells (of 671) with peak expression greater than background (2000 intensity units) and at least 10% of the maximum expression in that embryo. Quantitative expression data for all cells are located here: ftp://caltech.wormbase.org/pub/wormbase/datasets-published/murray2012/ Primary Identifier  Expr10455
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16 Anatomy Terms

Definition Name Synonym Primary Identifier
embryonic cell ABalpap   WBbt:0005949
embryonic cell ABalppp   WBbt:0006048
embryonic cell ABaraap   WBbt:0006272
embryonic cell ABalpaa   WBbt:0006338
embryonic cell ABaraaa   WBbt:0006691
embryonic cell ABalppa   WBbt:0006741
embryonic cell ABalapp   WBbt:0005946
embryonic cell ABalaap   WBbt:0005907
embryonic cell ABarapp   WBbt:0006192
embryonic cell ABarppa   WBbt:0006250
embryonic cell ABalaaa   WBbt:0006216
embryonic cell ABarpaa   WBbt:0006276
embryonic cell ABarapa   WBbt:0006328
embryonic cell ABarpap   WBbt:0006389
embryonic cell ABarppp   WBbt:0006501
embryonic cell ABalapa   WBbt:0006652

1 Genes

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00006557 tbx-38 C24H11.3 Caenorhabditis elegans

29 Life Stages

Remark Definition Other Name Public Name Primary Identifier
  The time period encompassing the 126th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 126 min post first-cleavage Ce WBls:0000237
  The time period encompassing the 130th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 130 min post first-cleavage Ce WBls:0000241
  The time period encompassing the 129th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 129 min post first-cleavage Ce WBls:0000240
  The time period encompassing the 128th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 128 min post first-cleavage Ce WBls:0000239
  The time period encompassing the 127th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 127 min post first-cleavage Ce WBls:0000238
  The time period encompassing the 133rd minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 133 min post first-cleavage Ce WBls:0000244
  The time period encompassing the 132nd minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 132 min post first-cleavage Ce WBls:0000243
  The time period encompassing the 131st minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 131 min post first-cleavage Ce WBls:0000242
  The time period encompassing the 123rd minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 123 min post first-cleavage Ce WBls:0000234
  The time period encompassing the 125th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 125 min post first-cleavage Ce WBls:0000236
  The time period encompassing the 124th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 124 min post first-cleavage Ce WBls:0000235
  The time period encompassing the 122nd minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 122 min post first-cleavage Ce WBls:0000233
  The time period encompassing the 107th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 107 min post first-cleavage Ce WBls:0000218
  The time period encompassing the 106th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 106 min post first-cleavage Ce WBls:0000217
  The time period encompassing the 105th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 105 min post first-cleavage Ce WBls:0000216
  The time period encompassing the 111st minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 111 min post first-cleavage Ce WBls:0000222
  The time period encompassing the 110th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 110 min post first-cleavage Ce WBls:0000221
  The time period encompassing the 109th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 109 min post first-cleavage Ce WBls:0000220
  The time period encompassing the 108th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 108 min post first-cleavage Ce WBls:0000219
  The time period encompassing the 115th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 115 min post first-cleavage Ce WBls:0000226
  The time period encompassing the 114th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 114 min post first-cleavage Ce WBls:0000225
  The time period encompassing the 113rd minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 113 min post first-cleavage Ce WBls:0000224
  The time period encompassing the 112nd minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 112 min post first-cleavage Ce WBls:0000223
  The time period encompassing the 116th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 116 min post first-cleavage Ce WBls:0000227
  The time period encompassing the 118th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 118 min post first-cleavage Ce WBls:0000229
  The time period encompassing the 117th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 117 min post first-cleavage Ce WBls:0000228
  The time period encompassing the 121st minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 121 min post first-cleavage Ce WBls:0000232
  The time period encompassing the 120th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 120 min post first-cleavage Ce WBls:0000231
  The time period encompassing the 119th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 119 min post first-cleavage Ce WBls:0000230