WormMine

WS296

Intermine data mining platform for C. elegans and related nematodes

Anatomy Term :

Definition  cell, posterior descendent of Z1. Name  Z1.p
Primary Identifier  WBbt:0007023

3 Children

Definition Name Synonym Primary Identifier
post-embryonic cell of pedigree Z1.pa Z1.pa   WBbt:0007594
post-embryonic cell of pedigree Z1.pp Z1.pp   WBbt:0007627
nucleus of pedigree Z1.p Z1.p nucleus   WBbt:0003308

2 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Genes that are enriched in hermaphrodite Z1 and Z4 daughter cells according to RNAseq analysis towards FACS sorted Z1 and Z4 daughter cells. Cuffdiff v2.1.1 WBPaper00048690:hermaphrodite-Z1-Z4-daughter_enriched
  Genes that are enriched in male Z1 and Z4 daughter cells according to RNAseq analysis towards FACS sorted Z1 and Z4 daughter cells. Cuffdiff v2.1.1 WBPaper00048690:male-Z1-Z4-daughter_enriched

4 Expression Patterns

Remark Reporter Gene Primary Identifier Pattern Subcellular Localization
    Expr1455 Almost every transgenic animal shows strong DAF-3/GFP expression in many, but not all, head neurons, the ventral nerve cord (both cell bodies and processes), the intestinal cells, especially the membrane adjacent to the intestinal lumen, and tail hypodermal cells and neurons. Weak expression in the pharynx, hypodermal V blast cells, P blast cells and hyp7 hypodermal cells is observed in about half of the transgenic animals. Expression in the tail hypodermal cells hyp 9, hyp 10, and hyp 11 is clearly seen in nearly every animal. This apparent difference between tail hypodermal expression and main body expression may be a consequence of the anatomy of the animal. The main body hypodermis is underlain by bright GFP in the intestine and ventral nerve cord, so weak expression in the hypodermis is hard to see against this background. Expression is rarely detected in dorsal body wall muscle. DAF-3/GFP is expressed in the distal tip cells and in their precursors, Z1.a and Z4.p, throughout development. DAF-3/GFP is also expressed strongly in unidentified vulval cells in adults. In wild-type embryos of 200 to 400 cells, DAF-3/GFP is expressed uniformly thoughout the embryo. In wild type, DAF-3/GFP is primarily, although not exclusively, cytoplasmic. DAF-3/GFP subcellular distribution was examined in head neurons in the vicinity of ASI (the cell that produces the DAF-7 signal), as well as in intestinal cells. DAF-3/GFP was predominantly cytoplasmic in all animals. However, in all animals, dim GFP fluorescence was seen in the nucleus of some of the cells with bright cytoplasmic fluorescence, and in 25% of the animals, equivalent DAF-3/GFP levels in the nucleus and cytoplasm was observed in one or more cells.
Expression pattern at adult stage was not described.   Expr1410 Expression in Z1 and Z4, the somatic gonad precursors, starts a few hours after these are born. Up to the formation of the somatic gonad primordium in late L2, LIN-26 protein was detected in all cells of the somatic gonad, except in the distal tip cells or dtcs (Z1.aa and Z4.pp). Staining was strongest in Z1 and Z4 and became weaker after each cell division. However, after Z1.a and Z4.p divided, LIN-26 was initially not detected in any of their daughters, but resynthesis occurred in Z1.ap and Z4.pa. During the L3 stage, expression was only detected in the anchor cell (AC) until the Pn.pxx cells were generated. After the last division round in L4 larvae, all uterine nuclei and two spermathecal-uterine junction nuclei expressed LIN-26 at very low levels. nuclei
    Expr3976 The NHR-25 protein can be detected in the nuclei of Z1 and Z4 as well as in the nuclei of their daughter cells, but not in the Z2 and Z3 precursors of the germline. nuclei
    Expr12127 In wild-type worms, POP-1::GFP expression was stronger in the nuclei of Z1.p and Z4.a cells than in Z1.a and Z4.p cells  

0 Life Stages

2 Parents

Definition Name Synonym Primary Identifier
Somatic gonad precursor cell Z1 lineage name: MSpppaap WBbt:0004577
a cell that is born in a worm after hatching. post-embryonic cell   WBbt:0007030