WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Anatomy Term :

Definition  Neuron class of two ciliated neurons that are associated with the sheath cells of the amphid sensilla. Name  AWA
Primary Identifier  WBbt:0005670
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2 Children

Definition Name Synonym Primary Identifier
Amphid wing cells, neurons having ciliated sheet-like sensory endings closely associated with amphid sheath AWAR lineage name: ABpraapapaa WBbt:0003830
Amphid wing cells, neurons having ciliated sheet-like sensory endings closely associated with amphid sheath AWAL lineage name: ABplaapapaa WBbt:0003831

11 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
Bacteria infection: P. aerugi-nosa PA14 Transcripts differentially expressed between AWA neurons of adult hermaphrodite worms exposed to PA14 and AWA neurons of adult hermaphrodite worms exposed to OP50 for 4-6 hours. P values are derived from two-sided exact test used in the R package edgeR and the FDR values are BenjaminiHochberg adjusted P values. FDR < 0.05 (set by WormBase Curator). WBPaper00064871:PA14_downregulated_AWA
Bacteria infection: P. aerugi-nosa PA14 Transcripts differentially expressed between AWA neurons of adult hermaphrodite worms exposed to PA14 and AWA neurons of adult hermaphrodite worms exposed to OP50 for 4-6 hours. P values are derived from two-sided exact test used in the R package edgeR and the FDR values are BenjaminiHochberg adjusted P values. FDR < 0.05 (set by WormBase Curator). WBPaper00064871:PA14_upregulated_AWA
  Transcripts that showed significantly decreased expression at the AWA neurons of in postdauer adults comparing to adult animals that bypassed the dauger stage. DESeq 2, FDR < 0.05. WBPaper00064494:postdauer_downregulated_AWA
  Top 300 transcripts enriched in ADF, ADL, AFD, ASE, ASG, ASH, ASI, ASJ, ASK, AWA, AWB, AWC according to single cell RNAseq. Top 300 enriched transcripts were determined by log2.ratio of the tpm in the cell type vs the tpm in the other cells * the log2 of the cell.type tpm. WBPaper00061340:Ciliated_amphid_neuron
  Transcripts that showed significantly increased expression at the AWA neurons of in postdauer adults comparing to adult animals that bypassed the dauger stage. DESeq 2, FDR < 0.05. WBPaper00064494:postdauer_upregulated_AWA
  Transcripts enriched in AWA according to single cell RNAseq. Genes that pass the Bonferroni threshold for multiple comparisons (q < 0.05) are significantly enriched. WBPaper00061651:AWA_enriched
Bacteria infection: P. fluorescens Transcripts differentially expressed between AWA neurons of adult hermaphrodite worms exposed to P. fluorescens and AWA neurons of adult hermaphrodite worms exposed to OP50 for 4-6 hours. P values are derived from two-sided exact test used in the R package edgeR and the FDR values are BenjaminiHochberg adjusted P values. FDR < 0.05 (set by WormBase Curator). WBPaper00064871:P.fluorescens_downregulated_AWA
Bacteria infection: P. fluorescens Transcripts differentially expressed between AWA neurons of adult hermaphrodite worms exposed to P. fluorescens and AWA neurons of adult hermaphrodite worms exposed to OP50 for 4-6 hours. P values are derived from two-sided exact test used in the R package edgeR and the FDR values are BenjaminiHochberg adjusted P values. FDR < 0.05 (set by WormBase Curator). WBPaper00064871:P.fluorescens_upregulated_AWA
Bacteria infection: P. aerugi-nosa PA14 Transcripts differentially expressed between AWA neurons of adult hermaphrodite worms exposed to PA14-gacA() and AWA neurons of adult hermaphrodite worms exposed to OP50 for 4-6 hours. P values are derived from two-sided exact test used in the R package edgeR and the FDR values are BenjaminiHochberg adjusted P values. FDR < 0.05 (set by WormBase Curator). WBPaper00064871:PA14-gacA()_downregulated_AWA
Bacteria infection: P. aerugi-nosa PA14 Transcripts differentially expressed between AWA neurons of adult hermaphrodite worms exposed to PA14-gacA() and AWA neurons of adult hermaphrodite worms exposed to OP50 for 4-6 hours. P values are derived from two-sided exact test used in the R package edgeR and the FDR values are BenjaminiHochberg adjusted P values. FDR < 0.05 (set by WormBase Curator). WBPaper00064871:PA14-gacA()_upregulated_AWA
  Single-cell RNA-Seq cell group 104 expressed in: AWA. CellRanger, DecontX, Monocle3, Louvain algorithm. WBPaper00065623:104

0 Expression Patterns

0 Life Stages

2 Parents

Definition Name Synonym Primary Identifier
neuron of the amphid sensillum amphid neuron amphid sensory neuron WBbt:0005394
neuron that senses volatile odorants odorsensory neuron   WBbt:0005839