WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

Expression Pattern :

Pattern  Inferred expression. EPIC dataset. http://epic.gs.washington.edu/ Large-scale cellular resolution compendium of gene expression dynamics throughout development. This reporter was inferred to be expressing in this cell or one of its embryonic progenitor cells as described below. To generate a compact description of which cells express a particular reporter irrespective of time, the authors defined a metric "peak expression" for each of the 671 terminal ("leaf") cells born during embryogenesis. For each of these cells, the peak expression is the maximal reporter intensity observed in that cell or any of its ancestors; this has the effect of transposing earlier expression forward in time to the terminal set of cells. This metric allows straightforward comparisons of genes' cellular and lineal expression overlap, even when the expression occurs with different timing and despite differences in the precise time point that curation ended in different movies, at the cost of ignoring the temporal dynamics of expression, a topic that requires separate treatment. For simplicity, the authors use the term "expressing cells" to mean the number of leaf cells (of 671) with peak expression greater than background (2000 intensity units) and at least 10% of the maximum expression in that embryo. Quantitative expression data for all cells are located here: ftp://caltech.wormbase.org/pub/wormbase/datasets-published/murray2012/ Primary Identifier  Expr10308
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43 Anatomy Terms

Definition Name Synonym Primary Identifier
right intestinal muscle cell, attach to intestine and body wall anterior to anus mu_int_R lineage name: MSppaapp WBbt:0003822
embryonic cell ABplpaapa   WBbt:0006115
embryonic cell ABalpapap   WBbt:0006288
embryonic cell ABplpapaaa   WBbt:0006679
embryonic cell ABprpapaaa   WBbt:0006588
embryonic cell ABplpaaaaa   WBbt:0005893
embryonic cell ABprpaapaa   WBbt:0005875
embryonic cell ABplpaaapp   WBbt:0005877
embryonic cell ABarapppap   WBbt:0005855
embryonic cell ABprpaaapp   WBbt:0005868
embryonic cell ABpraaaaaa   WBbt:0005988
embryonic cell ABaraappaa   WBbt:0006636
embryonic cell ABprpapaap   WBbt:0006010
embryonic cell ABplpaaapa   WBbt:0006093
embryonic cell ABarapppaa   WBbt:0006074
embryonic cell MSppapp   WBbt:0006073
embryonic cell ABplpppaaa   WBbt:0006025
embryonic cell ABalpapaap   WBbt:0006023
embryonic cell ABprpaaaaa   WBbt:0006027
embryonic cell ABprpaapap   WBbt:0006105
embryonic cell ABalppapap   WBbt:0006188
embryonic cell ABpraaaaap   WBbt:0006176
embryonic cell ABprpaaapa   WBbt:0006149
embryonic cell ABalaaaar   WBbt:0006155
embryonic cell ABalpapaaa   WBbt:0006257
embryonic cell ABaraappap   WBbt:0006286
embryonic cell ABpraaaapa   WBbt:0006376
embryonic cell ABprpappaa   WBbt:0006355
embryonic cell ABplpapaap   WBbt:0006403
embryonic cell ABplpaaaap   WBbt:0006528

1 Genes

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00009014 F21D5.9 F21D5.9 Caenorhabditis elegans

372 Life Stages

Remark Definition Other Name Public Name Primary Identifier
  The time period encompassing the 179th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 179 min post first-cleavage Ce WBls:0000290
  The time period encompassing the 183rd minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 183 min post first-cleavage Ce WBls:0000294
  The time period encompassing the 182nd minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 182 min post first-cleavage Ce WBls:0000293
  The time period encompassing the 181st minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 181 min post first-cleavage Ce WBls:0000292
  The time period encompassing the 180th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 180 min post first-cleavage Ce WBls:0000291
  The time period encompassing the 187th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 187 min post first-cleavage Ce WBls:0000298
  The time period encompassing the 186th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 186 min post first-cleavage Ce WBls:0000297
  The time period encompassing the 185th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 185 min post first-cleavage Ce WBls:0000296
  The time period encompassing the 184th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 184 min post first-cleavage Ce WBls:0000295
  The time period encompassing the 191st minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 191 min post first-cleavage Ce WBls:0000302
  The time period encompassing the 190th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 190 min post first-cleavage Ce WBls:0000301
  The time period encompassing the 189th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 189 min post first-cleavage Ce WBls:0000300
  The time period encompassing the 188th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 188 min post first-cleavage Ce WBls:0000299
  The time period encompassing the 195th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 195 min post first-cleavage Ce WBls:0000306
  The time period encompassing the 194th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 194 min post first-cleavage Ce WBls:0000305
  The time period encompassing the 193rd minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 193 min post first-cleavage Ce WBls:0000304
  The time period encompassing the 192nd minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 192 min post first-cleavage Ce WBls:0000303
  The time period encompassing the 199th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 199 min post first-cleavage Ce WBls:0000310
  The time period encompassing the 198th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 198 min post first-cleavage Ce WBls:0000309
  The time period encompassing the 197th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 197 min post first-cleavage Ce WBls:0000308
  The time period encompassing the 196th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 196 min post first-cleavage Ce WBls:0000307
  The time period encompassing the 203rd minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 203 min post first-cleavage Ce WBls:0000314
  The time period encompassing the 202nd minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 202 min post first-cleavage Ce WBls:0000313
  The time period encompassing the 201st minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 201 min post first-cleavage Ce WBls:0000312
  The time period encompassing the 200th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 200 min post first-cleavage Ce WBls:0000311
  The time period encompassing the 207th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 207 min post first-cleavage Ce WBls:0000318
  The time period encompassing the 206th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 206 min post first-cleavage Ce WBls:0000317
  The time period encompassing the 205th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 205 min post first-cleavage Ce WBls:0000316
  The time period encompassing the 204th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 204 min post first-cleavage Ce WBls:0000315
  The time period encompassing the 211st minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 211 min post first-cleavage Ce WBls:0000322