WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

Expression Pattern :

Pattern  Inferred Expression. EPIC dataset. http://epic.gs.washington.edu/ Large-scale cellular resolution compendium of gene expression dynamics throughout development. This reporter was inferred to be expressing in this cell or one of its embryonic progenitor cells as described below. To generate a compact description of which cells express a particular reporter irrespective of time, the authors defined a metric "peak expression" for each of the 671 terminal ("leaf") cells born during embryogenesis. For each of these cells, the peak expression is the maximal reporter intensity observed in that cell or any of its ancestors; this has the effect of transposing earlier expression forward in time to the terminal set of cells. This metric allows straightforward comparisons of genes' cellular and lineal expression overlap, even when the expression occurs with different timing and despite differences in the precise time point that curation ended in different movies, at the cost of ignoring the temporal dynamics of expression, a topic that requires separate treatment. For simplicity, the authors use the term "expressing cells" to mean the number of leaf cells (of 671) with peak expression greater than background (2000 intensity units) and at least 10% of the maximum expression in that embryo. Quantitative expression data for all cells are located here: ftp://caltech.wormbase.org/pub/wormbase/datasets-published/murray2012/ Primary Identifier  Expr10527
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8 Anatomy Terms

Definition Name Synonym Primary Identifier
Amphid interneuron AIYL lineage name: ABplpapaaap WBbt:0003963
Amphid interneuron AIYR lineage name: ABprpapaaap WBbt:0003961
Ring motor neuron/interneuron, has a posteriorly direct ed process that runs sublaterally SMDDR lineage name: ABprpapaaaa WBbt:0004971
Ring motor neuron/interneuron, has a posteriorly direct ed process that runs sublaterally SMDDL lineage name: ABplpapaaaa WBbt:0004972
embryonic cell ABpraaaap   WBbt:0006141
embryonic cell ABalaaaala   WBbt:0005966
embryonic cell ABalpppappa   WBbt:0006384
embryonic cell ABalpppappp   WBbt:0006623

1 Genes

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00006654 ttx-3 C40H5.5 Caenorhabditis elegans

304 Life Stages

Remark Definition Other Name Public Name Primary Identifier
  The time period encompassing the 191st minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 191 min post first-cleavage Ce WBls:0000302
  The time period encompassing the 190th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 190 min post first-cleavage Ce WBls:0000301
  The time period encompassing the 189th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 189 min post first-cleavage Ce WBls:0000300
  The time period encompassing the 195th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 195 min post first-cleavage Ce WBls:0000306
  The time period encompassing the 194th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 194 min post first-cleavage Ce WBls:0000305
  The time period encompassing the 193rd minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 193 min post first-cleavage Ce WBls:0000304
  The time period encompassing the 192nd minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 192 min post first-cleavage Ce WBls:0000303
  The time period encompassing the 199th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 199 min post first-cleavage Ce WBls:0000310
  The time period encompassing the 198th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 198 min post first-cleavage Ce WBls:0000309
  The time period encompassing the 197th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 197 min post first-cleavage Ce WBls:0000308
  The time period encompassing the 196th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 196 min post first-cleavage Ce WBls:0000307
  The time period encompassing the 203rd minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 203 min post first-cleavage Ce WBls:0000314
  The time period encompassing the 202nd minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 202 min post first-cleavage Ce WBls:0000313
  The time period encompassing the 201st minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 201 min post first-cleavage Ce WBls:0000312
  The time period encompassing the 200th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 200 min post first-cleavage Ce WBls:0000311
  The time period encompassing the 207th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 207 min post first-cleavage Ce WBls:0000318
  The time period encompassing the 206th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 206 min post first-cleavage Ce WBls:0000317
  The time period encompassing the 205th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 205 min post first-cleavage Ce WBls:0000316
  The time period encompassing the 204th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 204 min post first-cleavage Ce WBls:0000315
  The time period encompassing the 211st minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 211 min post first-cleavage Ce WBls:0000322
  The time period encompassing the 210th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 210 min post first-cleavage Ce WBls:0000321
  The time period encompassing the 209th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 209 min post first-cleavage Ce WBls:0000320
  The time period encompassing the 208th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 208 min post first-cleavage Ce WBls:0000319
  The time period encompassing the 215th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 215 min post first-cleavage Ce WBls:0000326
  The time period encompassing the 214th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 214 min post first-cleavage Ce WBls:0000325
  The time period encompassing the 213rd minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 213 min post first-cleavage Ce WBls:0000324
  The time period encompassing the 212nd minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 212 min post first-cleavage Ce WBls:0000323
  The time period encompassing the 219th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 219 min post first-cleavage Ce WBls:0000330
  The time period encompassing the 218th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 218 min post first-cleavage Ce WBls:0000329
  The time period encompassing the 217th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 217 min post first-cleavage Ce WBls:0000328