WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

Expression Pattern :

Pattern  Inferred Expression. EPIC dataset. http://epic.gs.washington.edu/ Large-scale cellular resolution compendium of gene expression dynamics throughout development. This reporter was inferred to be expressing in this cell or one of its embryonic progenitor cells as described below. To generate a compact description of which cells express a particular reporter irrespective of time, the authors defined a metric "peak expression" for each of the 671 terminal ("leaf") cells born during embryogenesis. For each of these cells, the peak expression is the maximal reporter intensity observed in that cell or any of its ancestors; this has the effect of transposing earlier expression forward in time to the terminal set of cells. This metric allows straightforward comparisons of genes' cellular and lineal expression overlap, even when the expression occurs with different timing and despite differences in the precise time point that curation ended in different movies, at the cost of ignoring the temporal dynamics of expression, a topic that requires separate treatment. For simplicity, the authors use the term "expressing cells" to mean the number of leaf cells (of 671) with peak expression greater than background (2000 intensity units) and at least 10% of the maximum expression in that embryo. Quantitative expression data for all cells are located here: ftp://caltech.wormbase.org/pub/wormbase/datasets-published/murray2012/ Primary Identifier  Expr10469
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83 Anatomy Terms

Definition Name Synonym Primary Identifier
Seam hypodermal cell, postembryonic blast cell V3L lineage name: ABplappapa WBbt:0004898
embryonic cell ABalppapa   WBbt:0005846
embryonic cell ABpraaapa   WBbt:0005895
embryonic cell ABalppaa   WBbt:0005944
embryonic cell ABalppapp   WBbt:0005938
embryonic cell ABplpapaa   WBbt:0005955
embryonic cell ABaraapap   WBbt:0006006
embryonic cell ABaraappa   WBbt:0005978
embryonic cell ABprpaapa   WBbt:0006047
embryonic cell ABpraappa   WBbt:0006035
embryonic cell ABaraappp   WBbt:0006064
embryonic cell ABplpaaaa   WBbt:0006099
embryonic cell ABalpppp   WBbt:0006089
embryonic cell ABpraapaa   WBbt:0006108
embryonic cell ABpraaaap   WBbt:0006141
embryonic cell ABplaaapp   WBbt:0006136
embryonic cell ABalpaapa   WBbt:0006181
embryonic cell ABplpapap   WBbt:0006177
embryonic cell ABaraaapp   WBbt:0006189
embryonic cell ABplpappa   WBbt:0006232
embryonic cell ABpraappp   WBbt:0006270
embryonic cell ABalpapap   WBbt:0006288
embryonic cell ABprpaaaa   WBbt:0006278
embryonic cell ABplpaaap   WBbt:0006313
embryonic cell ABaraaaa   WBbt:0006360
embryonic cell ABplaaaaa   WBbt:0006348
embryonic cell ABalpapaa   WBbt:0006386
embryonic cell ABplpaapp   WBbt:0006421
embryonic cell ABalpappp   WBbt:0006459
embryonic cell ABprpapaa   WBbt:0006446

1 Genes

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00013717 madf-10 Y106G6H.4 Caenorhabditis elegans

392 Life Stages

Remark Definition Other Name Public Name Primary Identifier
  The time period encompassing the 159th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 159 min post first-cleavage Ce WBls:0000270
  The time period encompassing the 163rd minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 163 min post first-cleavage Ce WBls:0000274
  The time period encompassing the 162nd minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 162 min post first-cleavage Ce WBls:0000273
  The time period encompassing the 161st minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 161 min post first-cleavage Ce WBls:0000272
  The time period encompassing the 160th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 160 min post first-cleavage Ce WBls:0000271
  The time period encompassing the 166th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 166 min post first-cleavage Ce WBls:0000277
  The time period encompassing the 165th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 165 min post first-cleavage Ce WBls:0000276
  The time period encompassing the 164th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 164 min post first-cleavage Ce WBls:0000275
  The time period encompassing the 167th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 167 min post first-cleavage Ce WBls:0000278
  The time period encompassing the 171st minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 171 min post first-cleavage Ce WBls:0000282
  The time period encompassing the 170th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 170 min post first-cleavage Ce WBls:0000281
  The time period encompassing the 169th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 169 min post first-cleavage Ce WBls:0000280
  The time period encompassing the 168th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 168 min post first-cleavage Ce WBls:0000279
  The time period encompassing the 175th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 175 min post first-cleavage Ce WBls:0000286
  The time period encompassing the 174th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 174 min post first-cleavage Ce WBls:0000285
  The time period encompassing the 173rd minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 173 min post first-cleavage Ce WBls:0000284
  The time period encompassing the 172nd minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 172 min post first-cleavage Ce WBls:0000283
  The time period encompassing the 179th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 179 min post first-cleavage Ce WBls:0000290
  The time period encompassing the 178th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 178 min post first-cleavage Ce WBls:0000289
  The time period encompassing the 177th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 177 min post first-cleavage Ce WBls:0000288
  The time period encompassing the 176th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 176 min post first-cleavage Ce WBls:0000287
  The time period encompassing the 183rd minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 183 min post first-cleavage Ce WBls:0000294
  The time period encompassing the 182nd minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 182 min post first-cleavage Ce WBls:0000293
  The time period encompassing the 181st minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 181 min post first-cleavage Ce WBls:0000292
  The time period encompassing the 180th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 180 min post first-cleavage Ce WBls:0000291
  The time period encompassing the 187th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 187 min post first-cleavage Ce WBls:0000298
  The time period encompassing the 186th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 186 min post first-cleavage Ce WBls:0000297
  The time period encompassing the 185th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 185 min post first-cleavage Ce WBls:0000296
  The time period encompassing the 184th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 184 min post first-cleavage Ce WBls:0000295
  The time period encompassing the 191st minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 191 min post first-cleavage Ce WBls:0000302