WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

Expression Pattern :

Pattern  Inferred Expression. EPIC dataset. http://epic.gs.washington.edu/ Large-scale cellular resolution compendium of gene expression dynamics throughout development. This reporter was inferred to be expressing in this cell or one of its embryonic progenitor cells as described below. To generate a compact description of which cells express a particular reporter irrespective of time, the authors defined a metric "peak expression" for each of the 671 terminal ("leaf") cells born during embryogenesis. For each of these cells, the peak expression is the maximal reporter intensity observed in that cell or any of its ancestors; this has the effect of transposing earlier expression forward in time to the terminal set of cells. This metric allows straightforward comparisons of genes' cellular and lineal expression overlap, even when the expression occurs with different timing and despite differences in the precise time point that curation ended in different movies, at the cost of ignoring the temporal dynamics of expression, a topic that requires separate treatment. For simplicity, the authors use the term "expressing cells" to mean the number of leaf cells (of 671) with peak expression greater than background (2000 intensity units) and at least 10% of the maximum expression in that embryo. Quantitative expression data for all cells are located here: ftp://caltech.wormbase.org/pub/wormbase/datasets-published/murray2012/ Primary Identifier  Expr10528
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35 Anatomy Terms

Definition Name Synonym Primary Identifier
Postembryonic blast cells for ventral cord motorneurons, ventral hypodermis, vulva, male preanal ganglion; ventral hypodermis in L1 P11 lineage name: ABplapappa WBbt:0004410
Seam hypodermal cell, postembryonic blast cell H1R lineage name: ABarpapppp WBbt:0004765
Seam hypodermal cell, postembryonic blast cell V6R lineage name: ABarpppppp WBbt:0004874
embryonic cell ABpraappa   WBbt:0006035
embryonic cell ABpraapap   WBbt:0006062
embryonic cell ABalpppp   WBbt:0006089
embryonic cell ABprpappa   WBbt:0006088
embryonic cell ABplpaapa   WBbt:0006115
embryonic cell ABpraapaa   WBbt:0006108
Embryonic cell of pedigree Dpapa. Dpapa lineage name: Dpapa WBbt:0006128
embryonic cell ABplpappa   WBbt:0006232
embryonic cell ABpraappp   WBbt:0006270
Embryonic cell of pedigreeDpapp . Dpapp lineage name: Dpapp WBbt:0006366
embryonic cell ABplpappp   WBbt:0006390
embryonic cell Daap   WBbt:0006525
embryonic cell ABplaaaap   WBbt:0006625
embryonic cell Epla   WBbt:0006661
Embryonic cell of pedigree ABplaapppp, precursor of embryonic large hypodermal syncytium. ABplaapppp hyp7 WBbt:0006477
embryonic cell ABarpaapa   WBbt:0005844
embryonic cell ABprpapppa   WBbt:0005972
Embryonic cell of pedigree ABplappppa, precursor of embryonic large hypodermal syncytium. ABplappppa lineage name: ABplappppa WBbt:0004671
embryonic cell ABplaapaaa   WBbt:0006069
embryonic cell ABprpaapap   WBbt:0006105
embryonic cell ABplaapapa   WBbt:0006120
Embryonic cell of pedigree ABplaappap, precursor of hyp6 syncytium. ABplaappap   WBbt:0006243
embryonic cell ABarpppap   WBbt:0006251
Embryonic cell of pedigree ABarpapapp, precursor of hyp6 syncytium. ABarpapapp   WBbt:0006299
embryonic cell ABarpaaap   WBbt:0006499
embryonic cell ABplaappaa   WBbt:0006466
embryonic cell ABplaapaap   WBbt:0006518

1 Genes

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00006853 unc-130 C47G2.2 Caenorhabditis elegans

417 Life Stages

Remark Definition Other Name Public Name Primary Identifier
  The time period encompassing the 135th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 135 min post first-cleavage Ce WBls:0000246
  The time period encompassing the 134th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 134 min post first-cleavage Ce WBls:0000245
  The time period encompassing the 139th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 139 min post first-cleavage Ce WBls:0000250
  The time period encompassing the 138th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 138 min post first-cleavage Ce WBls:0000249
  The time period encompassing the 137th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 137 min post first-cleavage Ce WBls:0000248
  The time period encompassing the 136th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 136 min post first-cleavage Ce WBls:0000247
  The time period encompassing the 143rd minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 143 min post first-cleavage Ce WBls:0000254
  The time period encompassing the 142nd minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 142 min post first-cleavage Ce WBls:0000253
  The time period encompassing the 141st minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 141 min post first-cleavage Ce WBls:0000252
  The time period encompassing the 140th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 140 min post first-cleavage Ce WBls:0000251
  The time period encompassing the 147th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 147 min post first-cleavage Ce WBls:0000258
  The time period encompassing the 146th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 146 min post first-cleavage Ce WBls:0000257
  The time period encompassing the 145th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 145 min post first-cleavage Ce WBls:0000256
  The time period encompassing the 144th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 144 min post first-cleavage Ce WBls:0000255
  The time period encompassing the 151st minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 151 min post first-cleavage Ce WBls:0000262
  The time period encompassing the 150th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 150 min post first-cleavage Ce WBls:0000261
  The time period encompassing the 149th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 149 min post first-cleavage Ce WBls:0000260
  The time period encompassing the 148th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 148 min post first-cleavage Ce WBls:0000259
  The time period encompassing the 155th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 155 min post first-cleavage Ce WBls:0000266
  The time period encompassing the 154th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 154 min post first-cleavage Ce WBls:0000265
  The time period encompassing the 153rd minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 153 min post first-cleavage Ce WBls:0000264
  The time period encompassing the 152nd minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 152 min post first-cleavage Ce WBls:0000263
  The time period encompassing the 159th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 159 min post first-cleavage Ce WBls:0000270
  The time period encompassing the 158th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 158 min post first-cleavage Ce WBls:0000269
  The time period encompassing the 157th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 157 min post first-cleavage Ce WBls:0000268
  The time period encompassing the 156th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 156 min post first-cleavage Ce WBls:0000267
  The time period encompassing the 163rd minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 163 min post first-cleavage Ce WBls:0000274
  The time period encompassing the 162nd minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 162 min post first-cleavage Ce WBls:0000273
  The time period encompassing the 161st minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 161 min post first-cleavage Ce WBls:0000272
  The time period encompassing the 160th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 160 min post first-cleavage Ce WBls:0000271