WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

Expression Pattern :

Pattern  Inferred expression. EPIC dataset. http://epic.gs.washington.edu/ Large-scale cellular resolution compendium of gene expression dynamics throughout development. This reporter was inferred to be expressing in this cell or one of its embryonic progenitor cells as described below. To generate a compact description of which cells express a particular reporter irrespective of time, the authors defined a metric "peak expression" for each of the 671 terminal ("leaf") cells born during embryogenesis. For each of these cells, the peak expression is the maximal reporter intensity observed in that cell or any of its ancestors; this has the effect of transposing earlier expression forward in time to the terminal set of cells. This metric allows straightforward comparisons of genes' cellular and lineal expression overlap, even when the expression occurs with different timing and despite differences in the precise time point that curation ended in different movies, at the cost of ignoring the temporal dynamics of expression, a topic that requires separate treatment. For simplicity, the authors use the term "expressing cells" to mean the number of leaf cells (of 671) with peak expression greater than background (2000 intensity units) and at least 10% of the maximum expression in that embryo. Quantitative expression data for all cells are located here: ftp://caltech.wormbase.org/pub/wormbase/datasets-published/murray2012/ Primary Identifier  Expr10290
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70 Anatomy Terms

Definition Name Synonym Primary Identifier
embryonic cell ABalaappa   WBbt:0006037
embryonic cell ABprpappp   WBbt:0005847
embryonic cell ABalppaa   WBbt:0005944
embryonic cell ABalpappa   WBbt:0005924
embryonic cell ABprpaapa   WBbt:0006047
embryonic cell ABpraappa   WBbt:0006035
embryonic cell ABalpppp   WBbt:0006089
embryonic cell ABalppap   WBbt:0006112
embryonic cell ABprpapap   WBbt:0006211
embryonic cell ABalpapap   WBbt:0006288
embryonic cell ABprpaaaa   WBbt:0006278
embryonic cell ABplpaaa   WBbt:0006315
embryonic cell ABalpapaa   WBbt:0006386
embryonic cell ABalpappp   WBbt:0006459
embryonic cell ABprpapaa   WBbt:0006446
embryonic cell ABprpaaap   WBbt:0006490
embryonic cell ABprpaapp   WBbt:0006605
embryonic cell ABalpppa   WBbt:0006649
embryonic cell Epra   WBbt:0006321
embryonic cell Eprp   WBbt:0006507
embryonic cell Eplp   WBbt:0006496
embryonic cell Earp   WBbt:0006646
embryonic cell ABprapppp   WBbt:0006056
embryonic cell ABplppapa   WBbt:0006091
embryonic cell ABprapppa   WBbt:0005909
embryonic cell ABplppapp   WBbt:0006356
embryonic cell MSaaapp   WBbt:0005892
embryonic cell MSaaaaa   WBbt:0006078
embryonic cell ABarpaapa   WBbt:0005844
embryonic cell ABarppap   WBbt:0005859

1 Genes

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00001253 elt-6 F52C12.5 Caenorhabditis elegans

409 Life Stages

Remark Definition Other Name Public Name Primary Identifier
  The time period encompassing the 143rd minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 143 min post first-cleavage Ce WBls:0000254
  The time period encompassing the 142nd minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 142 min post first-cleavage Ce WBls:0000253
  The time period encompassing the 147th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 147 min post first-cleavage Ce WBls:0000258
  The time period encompassing the 146th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 146 min post first-cleavage Ce WBls:0000257
  The time period encompassing the 145th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 145 min post first-cleavage Ce WBls:0000256
  The time period encompassing the 144th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 144 min post first-cleavage Ce WBls:0000255
  The time period encompassing the 151st minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 151 min post first-cleavage Ce WBls:0000262
  The time period encompassing the 150th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 150 min post first-cleavage Ce WBls:0000261
  The time period encompassing the 149th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 149 min post first-cleavage Ce WBls:0000260
  The time period encompassing the 148th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 148 min post first-cleavage Ce WBls:0000259
  The time period encompassing the 155th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 155 min post first-cleavage Ce WBls:0000266
  The time period encompassing the 154th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 154 min post first-cleavage Ce WBls:0000265
  The time period encompassing the 153rd minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 153 min post first-cleavage Ce WBls:0000264
  The time period encompassing the 152nd minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 152 min post first-cleavage Ce WBls:0000263
  The time period encompassing the 159th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 159 min post first-cleavage Ce WBls:0000270
  The time period encompassing the 158th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 158 min post first-cleavage Ce WBls:0000269
  The time period encompassing the 157th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 157 min post first-cleavage Ce WBls:0000268
  The time period encompassing the 156th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 156 min post first-cleavage Ce WBls:0000267
  The time period encompassing the 163rd minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 163 min post first-cleavage Ce WBls:0000274
  The time period encompassing the 162nd minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 162 min post first-cleavage Ce WBls:0000273
  The time period encompassing the 161st minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 161 min post first-cleavage Ce WBls:0000272
  The time period encompassing the 160th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 160 min post first-cleavage Ce WBls:0000271
  The time period encompassing the 166th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 166 min post first-cleavage Ce WBls:0000277
  The time period encompassing the 165th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 165 min post first-cleavage Ce WBls:0000276
  The time period encompassing the 164th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 164 min post first-cleavage Ce WBls:0000275
  The time period encompassing the 167th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 167 min post first-cleavage Ce WBls:0000278
  The time period encompassing the 171st minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 171 min post first-cleavage Ce WBls:0000282
  The time period encompassing the 170th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 170 min post first-cleavage Ce WBls:0000281
  The time period encompassing the 169th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 169 min post first-cleavage Ce WBls:0000280
  The time period encompassing the 168th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 168 min post first-cleavage Ce WBls:0000279