WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

Expression Pattern :

Pattern  Inferred expression. EPIC dataset. http://epic.gs.washington.edu/ Large-scale cellular resolution compendium of gene expression dynamics throughout development. This reporter was inferred to be expressing in this cell or one of its embryonic progenitor cells as described below. To generate a compact description of which cells express a particular reporter irrespective of time, the authors defined a metric "peak expression" for each of the 671 terminal ("leaf") cells born during embryogenesis. For each of these cells, the peak expression is the maximal reporter intensity observed in that cell or any of its ancestors; this has the effect of transposing earlier expression forward in time to the terminal set of cells. This metric allows straightforward comparisons of genes' cellular and lineal expression overlap, even when the expression occurs with different timing and despite differences in the precise time point that curation ended in different movies, at the cost of ignoring the temporal dynamics of expression, a topic that requires separate treatment. For simplicity, the authors use the term "expressing cells" to mean the number of leaf cells (of 671) with peak expression greater than background (2000 intensity units) and at least 10% of the maximum expression in that embryo. Quantitative expression data for all cells are located here: ftp://caltech.wormbase.org/pub/wormbase/datasets-published/murray2012/ Primary Identifier  Expr10217
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22 Anatomy Terms

Definition Name Synonym Primary Identifier
Seam hypodermal cell H0R lineage name: ABarpapppa WBbt:0004777
Anterior deirid sheath ADEshL lineage name: ABarppaaaa WBbt:0004005
Seam hypodermal cell, postembryonic blast cell V4R lineage name: ABarpppppa WBbt:0004892
Seam hypodermal cell, postembryonic blast cell V2R lineage name: ABarppppap WBbt:0004900
Seam hypodermal cell, postembryonic blast cell V3L lineage name: ABplappapa WBbt:0004898
Seam hypodermal cell, postembryonic blast cell V1R lineage name: ABarppppaa WBbt:0004904
Seam hypodermal cell, postembryonic blast cell V6R lineage name: ABarpppppp WBbt:0004874
embryonic cell Epra   WBbt:0006321
embryonic cell Ealp   WBbt:0006546
embryonic cell Eprp   WBbt:0006507
embryonic cell Eplp   WBbt:0006496
embryonic cell Epla   WBbt:0006661
embryonic cell Earp   WBbt:0006646
embryonic cell ABprapppp   WBbt:0006056
embryonic cell ABplappaap   WBbt:0005927
embryonic cell ABplapaapp   WBbt:0006175
embryonic cell ABprapapp   WBbt:0006290
embryonic cell ABplappapp   WBbt:0006324
embryonic cell ABprapapa   WBbt:0006510
embryonic cell ABplppppp   WBbt:0006574
embryonic cell ABpraappaa   WBbt:0006720
embryonic cell ABalapppaa   WBbt:0006703

1 Genes

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00015143 rbm-26 B0336.3 Caenorhabditis elegans

385 Life Stages

Remark Definition Other Name Public Name Primary Identifier
  The time period encompassing the 166th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 166 min post first-cleavage Ce WBls:0000277
  The time period encompassing the 167th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 167 min post first-cleavage Ce WBls:0000278
  The time period encompassing the 171st minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 171 min post first-cleavage Ce WBls:0000282
  The time period encompassing the 170th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 170 min post first-cleavage Ce WBls:0000281
  The time period encompassing the 169th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 169 min post first-cleavage Ce WBls:0000280
  The time period encompassing the 168th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 168 min post first-cleavage Ce WBls:0000279
  The time period encompassing the 175th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 175 min post first-cleavage Ce WBls:0000286
  The time period encompassing the 174th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 174 min post first-cleavage Ce WBls:0000285
  The time period encompassing the 173rd minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 173 min post first-cleavage Ce WBls:0000284
  The time period encompassing the 172nd minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 172 min post first-cleavage Ce WBls:0000283
  The time period encompassing the 179th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 179 min post first-cleavage Ce WBls:0000290
  The time period encompassing the 178th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 178 min post first-cleavage Ce WBls:0000289
  The time period encompassing the 177th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 177 min post first-cleavage Ce WBls:0000288
  The time period encompassing the 176th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 176 min post first-cleavage Ce WBls:0000287
  The time period encompassing the 183rd minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 183 min post first-cleavage Ce WBls:0000294
  The time period encompassing the 182nd minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 182 min post first-cleavage Ce WBls:0000293
  The time period encompassing the 181st minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 181 min post first-cleavage Ce WBls:0000292
  The time period encompassing the 180th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 180 min post first-cleavage Ce WBls:0000291
  The time period encompassing the 187th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 187 min post first-cleavage Ce WBls:0000298
  The time period encompassing the 186th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 186 min post first-cleavage Ce WBls:0000297
  The time period encompassing the 185th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 185 min post first-cleavage Ce WBls:0000296
  The time period encompassing the 184th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 184 min post first-cleavage Ce WBls:0000295
  The time period encompassing the 191st minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 191 min post first-cleavage Ce WBls:0000302
  The time period encompassing the 190th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 190 min post first-cleavage Ce WBls:0000301
  The time period encompassing the 189th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 189 min post first-cleavage Ce WBls:0000300
  The time period encompassing the 188th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 188 min post first-cleavage Ce WBls:0000299
  The time period encompassing the 195th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 195 min post first-cleavage Ce WBls:0000306
  The time period encompassing the 194th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 194 min post first-cleavage Ce WBls:0000305
  The time period encompassing the 193rd minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 193 min post first-cleavage Ce WBls:0000304
  The time period encompassing the 192nd minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 192 min post first-cleavage Ce WBls:0000303