WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

Expression Pattern :

Pattern  Inferred expression. EPIC dataset. http://epic.gs.washington.edu/ Large-scale cellular resolution compendium of gene expression dynamics throughout development. This reporter was inferred to be expressing in this cell or one of its embryonic progenitor cells as described below. To generate a compact description of which cells express a particular reporter irrespective of time, the authors defined a metric "peak expression" for each of the 671 terminal ("leaf") cells born during embryogenesis. For each of these cells, the peak expression is the maximal reporter intensity observed in that cell or any of its ancestors; this has the effect of transposing earlier expression forward in time to the terminal set of cells. This metric allows straightforward comparisons of genes' cellular and lineal expression overlap, even when the expression occurs with different timing and despite differences in the precise time point that curation ended in different movies, at the cost of ignoring the temporal dynamics of expression, a topic that requires separate treatment. For simplicity, the authors use the term "expressing cells" to mean the number of leaf cells (of 671) with peak expression greater than background (2000 intensity units) and at least 10% of the maximum expression in that embryo. Quantitative expression data for all cells are located here: ftp://caltech.wormbase.org/pub/wormbase/datasets-published/murray2012/ Primary Identifier  Expr10289
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4 Anatomy Terms

Definition Name Synonym Primary Identifier
embryonic cell Epra   WBbt:0006321
embryonic cell Eprp   WBbt:0006507
embryonic cell Epla   WBbt:0006661
embryonic cell Eala   WBbt:0006104

1 Genes

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00001250 elt-2 C33D3.1 Caenorhabditis elegans

24 Life Stages

Remark Definition Other Name Public Name Primary Identifier
  The time period encompassing the 223rd minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 223 min post first-cleavage Ce WBls:0000334
  The time period encompassing the 222nd minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 222 min post first-cleavage Ce WBls:0000333
  The time period encompassing the 227th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 227 min post first-cleavage Ce WBls:0000338
  The time period encompassing the 226th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 226 min post first-cleavage Ce WBls:0000337
  The time period encompassing the 225th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 225 min post first-cleavage Ce WBls:0000336
  The time period encompassing the 224th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 224 min post first-cleavage Ce WBls:0000335
  The time period encompassing the 231st minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 231 min post first-cleavage Ce WBls:0000342
  The time period encompassing the 230th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 230 min post first-cleavage Ce WBls:0000341
  The time period encompassing the 229th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 229 min post first-cleavage Ce WBls:0000340
  The time period encompassing the 228th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 228 min post first-cleavage Ce WBls:0000339
  The time period encompassing the 235th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 235 min post first-cleavage Ce WBls:0000346
  The time period encompassing the 234th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 234 min post first-cleavage Ce WBls:0000345
  The time period encompassing the 233rd minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 233 min post first-cleavage Ce WBls:0000344
  The time period encompassing the 232nd minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 232 min post first-cleavage Ce WBls:0000343
  The time period encompassing the 239th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 239 min post first-cleavage Ce WBls:0000350
  The time period encompassing the 238th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 238 min post first-cleavage Ce WBls:0000349
  The time period encompassing the 237th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 237 min post first-cleavage Ce WBls:0000348
  The time period encompassing the 236th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 236 min post first-cleavage Ce WBls:0000347
  The time period encompassing the 243rd minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 243 min post first-cleavage Ce WBls:0000354
  The time period encompassing the 242nd minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 242 min post first-cleavage Ce WBls:0000353
  The time period encompassing the 241st minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 241 min post first-cleavage Ce WBls:0000352
  The time period encompassing the 240th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 240 min post first-cleavage Ce WBls:0000351
  The time period encompassing the 245th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 245 min post first-cleavage Ce WBls:0000356
  The time period encompassing the 244th minute post first cleavage at 20 Centigrade with respect to Sulston's lineage tree. 244 min post first-cleavage Ce WBls:0000355