| Algorithm | Reads were called as present if the number of mapped reads met a minimum 50 reads in the mean of all samples and at least 1 read in the mean of either AB or P1 samples. Authors identified 7945 present genes of 20,240 of the predicted gene models. Present genes were called as giving rise to significantly asymmetric transcripts if they met a P-value < 0.1 after FDR adjustment using the Benjamani-Hochberg method within the DEseq package in R 2.12 (All other R analyses were performed in 3.0). When necessary, genes were ranked by negative log P-value. | Description | Transcripts enriched in embryonic AB cell comparing to in embryonic P1 cell, according to RNAseq analysis performed on dissected blastomere. |
| Primary Identifier | WBPaper00046691:AB_enriched |
| Definition | Name | Synonym | Primary Identifier |
|---|---|---|---|
| Embryonic founder cell | AB | AB blastomere | WBbt:0004015 |
| Remark | Definition | Other Name | Public Name | Primary Identifier |
|---|---|---|---|---|
| The C. elegans life stage spanning 0-20min after first cleavage at 20 Centigrade. Contains 2 cells. | 2-cell embryo Ce | WBls:0000007 |
