WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Expression Cluster :

Algorithm  Differential expression was calculated with cuffdiff, using a count threshold (-c parameter) of at least 15 for statistical significance testing. Significantly differentially expressed genes were defined as ones with at least 1 FPKM level of expression in at least one of the conditions and a q-value less than 0.05. Description  Genes that were down regulated as the result of the lmn-1(L535P) mutation.
Primary Identifier  WBPaper00050182:lmn-1(L535P)_downregulated

0 Anatomy Terms

225 Genes

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000029 abu-6 C03A7.7 Caenorhabditis elegans
WBGene00000030 abu-7 C03A7.8 Caenorhabditis elegans
WBGene00000031 abu-8 C03A7.14 Caenorhabditis elegans
WBGene00000033 abu-10 F35A5.3 Caenorhabditis elegans
WBGene00000063 act-1 T04C12.6 Caenorhabditis elegans
WBGene00000064 act-2 T04C12.5 Caenorhabditis elegans
WBGene00000066 act-4 M03F4.2 Caenorhabditis elegans
WBGene00000098 air-1 K07C11.2 Caenorhabditis elegans
WBGene00000105 alg-1 F48F7.1 Caenorhabditis elegans
WBGene00000106 alg-2 T07D3.7 Caenorhabditis elegans
WBGene00000113 alh-7 F45H10.1 Caenorhabditis elegans
WBGene00000123 ama-1 F36A4.7 Caenorhabditis elegans
WBGene00000207 asb-2 F02E8.1 Caenorhabditis elegans
WBGene00000229 atp-2 C34E10.6 Caenorhabditis elegans
WBGene00000249 bir-1 T27F2.3 Caenorhabditis elegans
WBGene00000301 cav-1 T13F2.8 Caenorhabditis elegans
WBGene00000444 ceh-21 T26C11.6 Caenorhabditis elegans
WBGene00000552 cmd-1 T21H3.3 Caenorhabditis elegans
WBGene00000667 col-92 W05B2.6 Caenorhabditis elegans
WBGene00000668 col-93 W05B2.5 Caenorhabditis elegans
WBGene00000669 col-94 W05B2.1 Caenorhabditis elegans
WBGene00000673 col-98 F14F7.1 Caenorhabditis elegans
WBGene00000677 col-103 F56B3.1 Caenorhabditis elegans
WBGene00000696 col-122 T05A1.2 Caenorhabditis elegans
WBGene00000712 col-139 F41F3.4 Caenorhabditis elegans
WBGene00000739 col-166 T07H6.3 Caenorhabditis elegans
WBGene00000740 col-167 T10E10.2 Caenorhabditis elegans
WBGene00000741 col-168 T10E10.1 Caenorhabditis elegans
WBGene00000743 col-170 T10E10.6 Caenorhabditis elegans
WBGene00000751 col-178 C34F6.2 Caenorhabditis elegans

1 Life Stages

Remark Definition Other Name Public Name Primary Identifier
  The fourth stage larva. At 25 Centigrade, it ranges 40-49.5 hours after fertilization, 26-35.5 hours after hatch. L4 larva Ce WBls:0000038

0 Processes

1 Regulated By Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003052 lmn-1 DY3.2 Caenorhabditis elegans

0 Regulated By Molecule