WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Expression Cluster :

Algorithm  All available microarray datasets for the GPL200 platform (Affymetrix C. elegans Genome Array) were obtained from the GEO repository. This included 2243 individual microarray experiments. These were normalized against each other with the software RMAexpress (Bolstad, 2014). Based on these normalized values, Pearsons correlation coefficients were obtained for each probe-probe pair of the 22,620 probes represented on this array type. The resulting list of correlation coefficients was then ranked to generate the ranked coexpression database with information on each probe represented on the GPL200 platform. Description  Coexpression clique No. 130, acy-2-F35C5.11, on the genome-wide coexpression clique map for the nematode GPL200 platform.
Primary Identifier  WBPaper00061527:acy-2-F35C5.11

0 Anatomy Terms

284 Genes

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000042 acr-2 K11G12.2 Caenorhabditis elegans
WBGene00000061 lgc-11 F48E3.7 Caenorhabditis elegans
WBGene00000069 acy-2 C10F3.3 Caenorhabditis elegans
WBGene00000074 adm-2 C04A11.4 Caenorhabditis elegans
WBGene00000092 ags-3 F32A6.4 Caenorhabditis elegans
WBGene00000103 akt-2 F28H6.1 Caenorhabditis elegans
WBGene00000429 ceh-2 C27A12.5 Caenorhabditis elegans
WBGene00000477 cft-1 C18C4.2 Caenorhabditis elegans
WBGene00000488 che-7 F26D11.10 Caenorhabditis elegans
WBGene00000510 cka-2 C52B9.1 Caenorhabditis elegans
WBGene00000545 clp-4 Y39A3CL.5 Caenorhabditis elegans
WBGene00000899 daf-3 F25E2.5 Caenorhabditis elegans
WBGene00000951 deg-3 K03B8.9 Caenorhabditis elegans
WBGene00000952 del-1 E02H4.1 Caenorhabditis elegans
WBGene00000955 des-2 T26H10.1 Caenorhabditis elegans
WBGene00000980 dhs-17 F29G9.6 Caenorhabditis elegans
WBGene00001553 gcy-33 F57F5.2 Caenorhabditis elegans
WBGene00001555 gcy-35 T04D3.4 Caenorhabditis elegans
WBGene00001663 gpa-1 T19C4.6 Caenorhabditis elegans
WBGene00001664 gpa-2 F38E1.5 Caenorhabditis elegans
WBGene00001672 gpa-10 C55H1.2 Caenorhabditis elegans
WBGene00001673 gpa-11 C16A11.1 Caenorhabditis elegans
WBGene00001957 hlh-13 F48D6.3 Caenorhabditis elegans
WBGene00002030 hst-3.1 F40H3.5 Caenorhabditis elegans
WBGene00002086 ins-3 ZK75.3 Caenorhabditis elegans
WBGene00002107 ins-24 ZC334.3 Caenorhabditis elegans
WBGene00002116 ins-33 W09C5.4 Caenorhabditis elegans
WBGene00002176 jip-1 F56D12.4 Caenorhabditis elegans
WBGene00002184 kel-1 C47D12.7 Caenorhabditis elegans
WBGene00002215 klc-2 C18C4.10 Caenorhabditis elegans

0 Life Stages

0 Processes

0 Regulated By Gene

0 Regulated By Molecule