WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Expression Cluster :

Algorithm  All available microarray datasets for the GPL200 platform (Affymetrix C. elegans Genome Array) were obtained from the GEO repository. This included 2243 individual microarray experiments. These were normalized against each other with the software RMAexpress (Bolstad, 2014). Based on these normalized values, Pearsons correlation coefficients were obtained for each probe-probe pair of the 22,620 probes represented on this array type. The resulting list of correlation coefficients was then ranked to generate the ranked coexpression database with information on each probe represented on the GPL200 platform. Description  Coexpression clique No. 263, T05B4.13_13892-T02H6.6, on the genome-wide coexpression clique map for the nematode GPL200 platform.
Primary Identifier  WBPaper00061527:T05B4.13_13892-T02H6.6

0 Anatomy Terms

36 Genes

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00001954 hlh-10 ZK682.4 Caenorhabditis elegans
WBGene00001956 hlh-12 C28C12.8 Caenorhabditis elegans
WBGene00001962 hlh-19 F57C12.3 Caenorhabditis elegans
WBGene00003683 nhr-93 T24A6.9 Caenorhabditis elegans
WBGene00008184 C49A1.1 C49A1.1 Caenorhabditis elegans
WBGene00011942 T23D5.3 T23D5.3 Caenorhabditis elegans
WBGene00013492 Y70C5C.1 Y70C5C.1 Caenorhabditis elegans
WBGene00016829 sre-54 C50E10.6 Caenorhabditis elegans
WBGene00017543 lgc-5 F17E9.7 Caenorhabditis elegans
WBGene00017580 lgc-4 F18G5.4 Caenorhabditis elegans
WBGene00018104 fbxb-53 F36H5.5 Caenorhabditis elegans
WBGene00018720 F53A3.1 F53A3.1 Caenorhabditis elegans
WBGene00019299 snai-1 K02D7.2 Caenorhabditis elegans
WBGene00020150 T01D1.5 T01D1.5 Caenorhabditis elegans
WBGene00021333 Y34D9A.8 Y34D9A.8 Caenorhabditis elegans
WBGene00022123 Y71F9AR.2 Y71F9AR.2 Caenorhabditis elegans
WBGene00022838 ZK993.2 ZK993.2 Caenorhabditis elegans
WBGene00023472 F16A11.5 F16A11.5 Caenorhabditis elegans
WBGene00011934 T22H2.4 T22H2.4 Caenorhabditis elegans
WBGene00020176 T02H6.6 T02H6.6 Caenorhabditis elegans
WBGene00017139 clec-141 EEED8.11 Caenorhabditis elegans
WBGene00020459 fbxa-23 T12B5.13 Caenorhabditis elegans
WBGene00017754 chtb-2 F23F12.8 Caenorhabditis elegans
WBGene00010313 F59B2.11 F59B2.11 Caenorhabditis elegans
WBGene00011873 T20G5.12 T20G5.12 Caenorhabditis elegans
WBGene00023302 F58E2.6 F58E2.6 Caenorhabditis elegans
WBGene00010176 F56H11.6 F56H11.6 Caenorhabditis elegans
WBGene00015877 C17B7.3 C17B7.3 Caenorhabditis elegans
WBGene00015886 C17B7.12 C17B7.12 Caenorhabditis elegans
WBGene00015436 C04E12.6 C04E12.6 Caenorhabditis elegans

0 Life Stages

0 Processes

0 Regulated By Gene

0 Regulated By Molecule