WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Expression Cluster :

Algorithm  A gene model was built based on the WS260 annotation. Tag counts for each gene were extracted from STAR aligned BAM files, anddifferential gene expression between N2 and mutant backgrounds was tested using DESeq2. A false discovery rate(FDR) < 0.01 and LFC > 0.5849 was used to define genes as upregulated, and FDR < 0.01 and LFC < -1 was used to define genes asdownregulated. Description  Transcripts that showed significantly increased expression in lin-36(we36) comparing to in N2 animals at starved L1 larva stage.
Primary Identifier  WBPaper00062056:lin-36(we36)_upregulated

0 Anatomy Terms

315 Genes

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000098 air-1 K07C11.2 Caenorhabditis elegans
WBGene00000099 air-2 B0207.4 Caenorhabditis elegans
WBGene00000121 aly-2 F23B2.6 Caenorhabditis elegans
WBGene00000197 aars-2 F28H1.3 Caenorhabditis elegans
WBGene00000227 atm-1 Y48G1BL.2 Caenorhabditis elegans
WBGene00000249 bir-1 T27F2.3 Caenorhabditis elegans
WBGene00000257 bmk-1 F23B12.8 Caenorhabditis elegans
WBGene00000264 brc-1 C36A4.8 Caenorhabditis elegans
WBGene00000265 brd-1 K04C2.4 Caenorhabditis elegans
WBGene00000275 bub-1 R06C7.8 Caenorhabditis elegans
WBGene00000405 cdk-1 T05G5.3 Caenorhabditis elegans
WBGene00000411 cdl-1 R06F6.1 Caenorhabditis elegans
WBGene00000413 cdt-1 Y54E10A.15 Caenorhabditis elegans
WBGene00000417 ced-3 C48D1.2 Caenorhabditis elegans
WBGene00000422 ced-8 F08F1.5 Caenorhabditis elegans
WBGene00000460 ceh-39 T26C11.7 Caenorhabditis elegans
WBGene00000467 cep-1 F52B5.5 Caenorhabditis elegans
WBGene00000498 chk-1 Y39H10A.7 Caenorhabditis elegans
WBGene00000503 cht-1 C04F6.3 Caenorhabditis elegans
WBGene00000520 cku-80 R07E5.8 Caenorhabditis elegans
WBGene00000592 coh-3 F08H9.1 Caenorhabditis elegans
WBGene00000804 csc-1 Y48E1B.12 Caenorhabditis elegans
WBGene00000865 cyb-1 ZC168.4 Caenorhabditis elegans
WBGene00000868 cyb-3 T06E6.2 Caenorhabditis elegans
WBGene00000871 cye-1 C37A2.4 Caenorhabditis elegans
WBGene00000875 cyk-4 K08E3.6 Caenorhabditis elegans
WBGene00000939 dcr-1 K12H4.8 Caenorhabditis elegans
WBGene00001002 div-1 R01H10.1 Caenorhabditis elegans
WBGene00001016 dna-2 F43G6.1 Caenorhabditis elegans
WBGene00001046 dnj-28 Y54E10BL.4 Caenorhabditis elegans

1 Life Stages

Remark Definition Other Name Public Name Primary Identifier
  The first stage larva. At 25 Centigrade, it ranges 14-25.5 hours after fertilization, 0-11.5 hours after hatch. L1 larva Ce WBls:0000024

0 Processes

1 Regulated By Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003021 lin-36 F44B9.6 Caenorhabditis elegans

0 Regulated By Molecule