WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Expression Cluster :

Algorithm  For differential gene expression analysis, sets of independent mutant and control mapped reads (e.g biological replicates) were used in cuffdiff analysis. The cutoff of FDR(q value)=0.05 was used as a significance cutoff for all the analyses. Description  Transcripts that showed significantly increased expression in nos-1(gv5)nos-2(RNAi) comparing to in wild type, in primordial germ cells (PGCs) at L1 larva, according to SMARTseq.
Primary Identifier  WBPaper00053321:nos-1(gv5)nos-2(RNAi)_upregulated_L1_SMARTseq

1 Anatomy Terms

Definition Name Synonym Primary Identifier
member of a set of two cells that generate exclusively sperm and ovum. germline precursor cell PGC WBbt:0006849

871 Genes

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000003 aat-2 F07C3.7 Caenorhabditis elegans
WBGene00000004 aat-3 F52H2.2 Caenorhabditis elegans
WBGene00000040 aco-1 ZK455.1 Caenorhabditis elegans
WBGene00000068 acy-1 F17C8.1 Caenorhabditis elegans
WBGene00000070 acy-3 C44F1.5 Caenorhabditis elegans
WBGene00000074 adm-2 C04A11.4 Caenorhabditis elegans
WBGene00000075 adm-4 ZK154.7 Caenorhabditis elegans
WBGene00000095 aha-1 C25A1.11 Caenorhabditis elegans
WBGene00000103 akt-2 F28H6.1 Caenorhabditis elegans
WBGene00000105 alg-1 F48F7.1 Caenorhabditis elegans
WBGene00000161 apa-2 T20B5.1 Caenorhabditis elegans
WBGene00000164 apm-3 F53H8.1 Caenorhabditis elegans
WBGene00000170 aqp-2 C01G6.1 Caenorhabditis elegans
WBGene00000178 aqp-10 ZK1321.3 Caenorhabditis elegans
WBGene00000207 asb-2 F02E8.1 Caenorhabditis elegans
WBGene00000210 asg-2 C53B7.4 Caenorhabditis elegans
WBGene00000217 asp-4 R12H7.2 Caenorhabditis elegans
WBGene00000221 atf-4 T04C10.4 Caenorhabditis elegans
WBGene00000222 atf-6 F45E6.2 Caenorhabditis elegans
WBGene00000225 atgp-2 C38C6.2 Caenorhabditis elegans
WBGene00000277 cab-1 C23H4.1 Caenorhabditis elegans
WBGene00000289 cam-1 C01G6.8 Caenorhabditis elegans
WBGene00000294 cas-1 F41G4.2 Caenorhabditis elegans
WBGene00000301 cav-1 T13F2.8 Caenorhabditis elegans
WBGene00000386 cdc-25.1 K06A5.7 Caenorhabditis elegans
WBGene00000393 cdf-1 C15B12.7 Caenorhabditis elegans
WBGene00000396 cdh-4 F25F2.2 Caenorhabditis elegans
WBGene00000411 cdl-1 R06F6.1 Caenorhabditis elegans
WBGene00000414 cec-1 ZK1236.2 Caenorhabditis elegans
WBGene00000443 ceh-20 F31E3.1 Caenorhabditis elegans

1 Life Stages

Remark Definition Other Name Public Name Primary Identifier
  The first stage larva. At 25 Centigrade, it ranges 14-25.5 hours after fertilization, 0-11.5 hours after hatch. L1 larva Ce WBls:0000024

0 Processes

0 Regulated By Gene

0 Regulated By Molecule