WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Expression Cluster :

Algorithm  DESeq and EdgeR were used. A threshold of 1.5 log2 fold change and a p value <10 % were applied. let-418: wild-type; let-418(RNAi)-treated embryos; chd-3: chd-3(eh4);controlGFP(RNAi)-treated embryos; chd-3_let-418: chd-3(eh4); let-418(RNAi)-treated embryos. All fold changes are calculated versus wild-type;control(RNAi)-treated embryos. 1h and 3h correspond to the 24- and 100-cell stages, respectively. Description  Transcripts that showed significantly increased expression in 100-cell stage embryo of let-418(RNAi) animals, comparing to in control RNAi (with gfp control vector) animals.
Primary Identifier  WBPaper00050163:let-418(RNAi)_upregulated_100-cell-embryo

0 Anatomy Terms

283 Genes

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000023 abt-5 Y53C10A.9 Caenorhabditis elegans
WBGene00000279 cah-1 F54D8.4 Caenorhabditis elegans
WBGene00000397 cdh-5 F08B4.2 Caenorhabditis elegans
WBGene00000553 cmk-1 K07A9.2 Caenorhabditis elegans
WBGene00000620 col-43 ZC513.8 Caenorhabditis elegans
WBGene00000658 col-83 F33A8.9 Caenorhabditis elegans
WBGene00000731 col-158 D2023.7 Caenorhabditis elegans
WBGene00001119 dyf-3 C04C3.5 Caenorhabditis elegans
WBGene00001175 egl-6 C46F4.1 Caenorhabditis elegans
WBGene00001410 feh-1 Y54F10AM.2 Caenorhabditis elegans
WBGene00001435 fkh-3 C29F7.4 Caenorhabditis elegans
WBGene00001436 fkh-4 C29F7.5 Caenorhabditis elegans
WBGene00001453 flp-10 T06C10.4 Caenorhabditis elegans
WBGene00001476 fmo-1 K08C7.2 Caenorhabditis elegans
WBGene00001490 frm-3 H05G16.1 Caenorhabditis elegans
WBGene00001544 gcy-19 C17F4.6 Caenorhabditis elegans
WBGene00001734 grl-25 ZK643.8 Caenorhabditis elegans
WBGene00001777 gst-29 Y53F4B.32 Caenorhabditis elegans
WBGene00001792 gst-44 F13A7.10 Caenorhabditis elegans
WBGene00001842 her-1 ZK287.8 Caenorhabditis elegans
WBGene00002055 ifc-1 F37B4.2 Caenorhabditis elegans
WBGene00002149 irk-1 R03E9.4 Caenorhabditis elegans
WBGene00003528 nas-9 C37H5.9 Caenorhabditis elegans
WBGene00003533 nas-14 F09E8.6 Caenorhabditis elegans
WBGene00003876 pept-2 C06G8.2 Caenorhabditis elegans
WBGene00003877 pept-1 K04E7.2 Caenorhabditis elegans
WBGene00003943 pbo-4 K09C8.1 Caenorhabditis elegans
WBGene00003983 pes-10 Y46G5A.27 Caenorhabditis elegans
WBGene00004212 ptl-1 F42G9.9 Caenorhabditis elegans
WBGene00004352 rgs-9 ZC53.7 Caenorhabditis elegans

1 Life Stages

Remark Definition Other Name Public Name Primary Identifier
  The C. elegans life stage spanning 155-165 min after first cleavage at 20 Centigrade. Contains 96 cells. 96-cell embryo Ce WBls:0000090

0 Processes

1 Regulated By Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00002637 let-418 F26F12.7 Caenorhabditis elegans

0 Regulated By Molecule