WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Expression Cluster :

Algorithm  Top 300 enriched transcripts were determined by log2.ratio of the tpm in the cell type vs the tpm in the other cells * the log2 of the cell.type tpm. Description  Top 300 transcripts enriched in ALML, ALMR, BDUL, BDUR according to single cell RNAseq.
Primary Identifier  WBPaper00061340:ALM_BDU
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4 Anatomy Terms

Definition Name Synonym Primary Identifier
Neuron, process runs along excretory canal and into ring, unique darkly staining synaptic vesicles BDUL lineage name: ABarppaappp WBbt:0003812
Neuron, process runs along excretory canal and into ring, unique darkly staining synaptic vesicles BDUR lineage name: ABarpppappp WBbt:0003811
Anterior lateral microtubule cell, touch receptor ALML lineage name: ABarppaappa WBbt:0003954
Anterior lateral microtubule cell, touch receptor ALMR lineage name: ABarpppappa WBbt:0003953

299 Genes

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000027 abu-4 Y5H2A.3 Caenorhabditis elegans
WBGene00000051 acr-12 R01E6.4 Caenorhabditis elegans
WBGene00000096 ahr-1 C41G7.5 Caenorhabditis elegans
WBGene00000180 arc-1 ZK1320.6 Caenorhabditis elegans
WBGene00000195 arr-1 F53H8.2 Caenorhabditis elegans
WBGene00000377 cct-1 T05C12.7 Caenorhabditis elegans
WBGene00000378 cct-2 T21B10.7 Caenorhabditis elegans
WBGene00000379 cct-4 K01C8.10 Caenorhabditis elegans
WBGene00000380 cct-5 C07G2.3 Caenorhabditis elegans
WBGene00000381 cct-6 F01F1.8 Caenorhabditis elegans
WBGene00000496 chs-1 T25G3.2 Caenorhabditis elegans
WBGene00000502 chp-1 Y110A7A.13 Caenorhabditis elegans
WBGene00000553 cmk-1 K07A9.2 Caenorhabditis elegans
WBGene00000584 cog-1 R03C1.3 Caenorhabditis elegans
WBGene00000621 col-44 F54B11.2 Caenorhabditis elegans
WBGene00000665 col-90 C29E4.1 Caenorhabditis elegans
WBGene00000775 cpin-1 F38E11.3 Caenorhabditis elegans
WBGene00000858 cwn-2 W01B6.1 Caenorhabditis elegans
WBGene00000885 cyn-9 T27D1.1 Caenorhabditis elegans
WBGene00000917 daf-25 Y48G1A.3 Caenorhabditis elegans
WBGene00001088 dpy-30 ZK863.6 Caenorhabditis elegans
WBGene00001165 efn-4 F56A11.3 Caenorhabditis elegans
WBGene00001385 far-1 F02A9.2 Caenorhabditis elegans
WBGene00001466 gpla-1 F58H1.4 Caenorhabditis elegans
WBGene00001491 frm-4 C24A11.8 Caenorhabditis elegans
WBGene00001554 gcy-34 M04G12.3 Caenorhabditis elegans
WBGene00001557 gcy-37 C54E4.3 Caenorhabditis elegans
WBGene00001630 gly-5 Y39E4B.12 Caenorhabditis elegans
WBGene00001637 gly-12 F48E3.1 Caenorhabditis elegans
WBGene00001682 gpc-2 F08B6.2 Caenorhabditis elegans

1 Life Stages

Remark Definition Other Name Public Name Primary Identifier
  The second stage larva. At 25 Centigrade, it ranges 25.5-32.5 hours after fertilization, 11.5-18.5 hours after hatch. L2 larva Ce WBls:0000027

0 Processes

0 Regulated By Gene

0 Regulated By Molecule