WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Expression Cluster :

Algorithm  All available microarray datasets for the GPL200 platform (Affymetrix C. elegans Genome Array) were obtained from the GEO repository. This included 2243 individual microarray experiments. These were normalized against each other with the software RMAexpress (Bolstad, 2014). Based on these normalized values, Pearsons correlation coefficients were obtained for each probe-probe pair of the 22,620 probes represented on this array type. The resulting list of correlation coefficients was then ranked to generate the ranked coexpression database with information on each probe represented on the GPL200 platform. Description  Coexpression clique No. 83, sol-1-jnk-1_18695, on the genome-wide coexpression clique map for the nematode GPL200 platform.
Primary Identifier  WBPaper00061527:sol-1-jnk-1_18695

0 Anatomy Terms

303 Genes

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000035 ace-1 W09B12.1 Caenorhabditis elegans
WBGene00000037 ace-3 Y48B6A.8 Caenorhabditis elegans
WBGene00000047 acr-8 ZC504.2 Caenorhabditis elegans
WBGene00000068 acy-1 F17C8.1 Caenorhabditis elegans
WBGene00000086 aex-3 C02H7.3 Caenorhabditis elegans
WBGene00000188 arl-3 F19H8.3 Caenorhabditis elegans
WBGene00000237 bam-2 Y71F9AR.1 Caenorhabditis elegans
WBGene00000254 bli-4 K04F10.4 Caenorhabditis elegans
WBGene00000280 cah-2 D1022.8 Caenorhabditis elegans
WBGene00000284 cah-6 T28F2.3 Caenorhabditis elegans
WBGene00000367 cca-1 C54D2.5 Caenorhabditis elegans
WBGene00000368 ccb-1 T28F2.5 Caenorhabditis elegans
WBGene00000395 cdh-3 ZK112.7 Caenorhabditis elegans
WBGene00000437 ceh-13 R13A5.5 Caenorhabditis elegans
WBGene00000441 ceh-18 ZC64.3 Caenorhabditis elegans
WBGene00000448 pros-1 K12H4.1 Caenorhabditis elegans
WBGene00000491 che-12 B0024.8 Caenorhabditis elegans
WBGene00000492 che-13 F59C6.7 Caenorhabditis elegans
WBGene00000516 cki-1 T05A6.1 Caenorhabditis elegans
WBGene00000518 ckk-1 C05H8.1 Caenorhabditis elegans
WBGene00000553 cmk-1 K07A9.2 Caenorhabditis elegans
WBGene00000584 cog-1 R03C1.3 Caenorhabditis elegans
WBGene00000832 ctn-1 Y23H5A.5 Caenorhabditis elegans
WBGene00001115 dyb-1 F47G6.1 Caenorhabditis elegans
WBGene00001116 dyc-1 C33G3.1 Caenorhabditis elegans
WBGene00001117 dyf-1 F54C1.5 Caenorhabditis elegans
WBGene00001127 dyf-11 C02H7.1 Caenorhabditis elegans
WBGene00001135 eat-4 ZK512.6 Caenorhabditis elegans
WBGene00001187 egl-19 C48A7.1 Caenorhabditis elegans
WBGene00001248 elp-1 F38A6.2 Caenorhabditis elegans

0 Life Stages

0 Processes

0 Regulated By Gene

0 Regulated By Molecule