WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Expression Cluster :

Algorithm  A gene model was built based on the WS260 annotation. Tag counts for each gene were extracted from STAR aligned BAM files, anddifferential gene expression between N2 and mutant backgrounds was tested using DESeq2. A false discovery rate(FDR) < 0.01 and LFC > 0.5849 was used to define genes as upregulated, and FDR < 0.01 and LFC < -1 was used to define genes asdownregulated. Description  Transcripts that showed significantly decreased expression in lin-15B(n744) comparing to in N2 animals at starved L1 larva stage.
Primary Identifier  WBPaper00062056:lin-15B(n744)_downregulated

0 Anatomy Terms

102 Genes

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000136 amt-4 C05E11.5 Caenorhabditis elegans
WBGene00000665 col-90 C29E4.1 Caenorhabditis elegans
WBGene00001005 dlc-1 T26A5.9 Caenorhabditis elegans
WBGene00001059 dpf-6 F44B9.1 Caenorhabditis elegans
WBGene00001252 elt-4 C39B10.6 Caenorhabditis elegans
WBGene00001460 flp-17 C52D10.11 Caenorhabditis elegans
WBGene00001776 gst-28 Y53F4B.31 Caenorhabditis elegans
WBGene00002116 ins-33 W09C5.4 Caenorhabditis elegans
WBGene00003134 mat-3 F10C5.1 Caenorhabditis elegans
WBGene00003234 mif-1 Y56A3A.3 Caenorhabditis elegans
WBGene00003658 nhr-68 H12C20.3 Caenorhabditis elegans
WBGene00003663 nhr-73 C27C7.4 Caenorhabditis elegans
WBGene00004062 pmp-5 T10H9.5 Caenorhabditis elegans
WBGene00004192 prx-2 ZK809.7 Caenorhabditis elegans
WBGene00004227 ptr-13 K07C10.1 Caenorhabditis elegans
WBGene00004987 spp-2 T08A9.12 Caenorhabditis elegans
WBGene00005138 srd-61 C01B4.5 Caenorhabditis elegans
WBGene00006200 str-154 Y45G12C.12 Caenorhabditis elegans
WBGene00006534 tba-8 ZK899.4 Caenorhabditis elegans
WBGene00007331 pho-11 C05C10.4 Caenorhabditis elegans
WBGene00007487 C09G1.5 C09G1.5 Caenorhabditis elegans
WBGene00007565 clec-48 C14A6.1 Caenorhabditis elegans
WBGene00008220 C50B6.7 C50B6.7 Caenorhabditis elegans
WBGene00008451 cest-3 E01G6.3 Caenorhabditis elegans
WBGene00008589 nlp-57 F08G12.8 Caenorhabditis elegans
WBGene00008626 nlp-79 F09E8.8 Caenorhabditis elegans
WBGene00009504 F37B12.1 F37B12.1 Caenorhabditis elegans
WBGene00010005 cnc-7 F53H2.2 Caenorhabditis elegans
WBGene00010215 nhr-193 F57G8.6 Caenorhabditis elegans
WBGene00011167 chil-23 R09D1.11 Caenorhabditis elegans

1 Life Stages

Remark Definition Other Name Public Name Primary Identifier
  The first stage larva. At 25 Centigrade, it ranges 14-25.5 hours after fertilization, 0-11.5 hours after hatch. L1 larva Ce WBls:0000024

0 Processes

1 Regulated By Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00023497 lin-15B ZK662.4 Caenorhabditis elegans

0 Regulated By Molecule