WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

Expression Cluster :

Algorithm  CellRanger, DecontX, Monocle3, Louvain algorithm. Description  Single-cell RNA-Seq cell group 76 expressed in: pm1_pm2 (pharyngeal muscle).
Primary Identifier  WBPaper00065623:76
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6 Anatomy Terms

Definition Name Synonym Primary Identifier
Neuron class of eleven motoneurons, distributed along the ventral cord, which innervate ventral body muscles. VB neuron   WBbt:0005336
first layer pharyngeal muscle cell. pm1 M1 WBbt:0003744
Neuron class of two pharyngeal interneuron. I2 neuron   WBbt:0003645
Neuron class of one pharyngeal motorneuron. M4 neuron lineage name: MSpaaaaaa WBbt:0004467
second layer pharyngeal muscle cell. pm2 m2 WBbt:0003742
Neuron class of three interneurons, which send processes anteriorly up the sub-lateral cords in the head. SAB   WBbt:0005396

10 Genes

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00006583 tnc-2 ZK673.7 Caenorhabditis elegans
WBGene00006589 tnt-4 T08B1.2 Caenorhabditis elegans
WBGene00006642 tsp-16 F01E11.4 Caenorhabditis elegans
WBGene00007200 vamp-8 B0513.9 Caenorhabditis elegans
WBGene00013515 Y73F4A.2 Y73F4A.2 Caenorhabditis elegans
WBGene00017970 F32A5.4 F32A5.4 Caenorhabditis elegans
WBGene00021127 W10C8.4 W10C8.4 Caenorhabditis elegans
WBGene00044260 Y87G2A.19 Y87G2A.19 Caenorhabditis elegans
WBGene00012883 Y45F10D.2 Y45F10D.2 Caenorhabditis elegans
WBGene00009097 fipr-2 F23H12.9 Caenorhabditis elegans

1 Life Stages

Remark Definition Other Name Public Name Primary Identifier
  At 20 Centigrade: 24-48 hours after L4-adult molt. 4-5 days after first cleavage. 1-day post-L4 adult hermaphrodite Ce WBls:0000064

0 Processes

0 Regulated By Gene

0 Regulated By Molecule