WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Anatomy Term :

Definition  Neuron class of three interneurons, which send processes anteriorly up the sub-lateral cords in the head. Name  SAB
Primary Identifier  WBbt:0005396
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3 Children

Definition Name Synonym Primary Identifier
Ring interneuron, anteriorly projecting process that runs sublaterally, synapses to anterior body muscles in L1 SABD lineage name: ABplppapaap WBbt:0004999
Ring interneuron, anteriorly projecting process that runs sublaterally, synapses to anterior body muscles in L1 SABVL lineage name: ABplppapaaaa WBbt:0004998
Ring interneuron, anteriorly projecting process that runs sublaterally, synapses to anterior body muscles in L1 SABVR lineage name: ABprppapaaaa WBbt:0004997

141 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Single-cell RNA-Seq cell group 34 expressed in: Seam cells (grd+). CellRanger, DecontX, Monocle3, Louvain algorithm. WBPaper00065623:34
  Single-cell RNA-Seq cell group 74 expressed in: Vulval cells. CellRanger, DecontX, Monocle3, Louvain algorithm. WBPaper00065623:74
  Expressed transcripts enriched in embryonic motor neurons (identified by unc-4::GFP expressing cells). Comparisons of RMA normalized intensities for unc-4::GFP vs reference cells were statistically analyzed using Significance Analysis of Microarrays software (SAM, Stanford). A two-class unpaired analysis of the data was performed to identify genes that differ by 1.7-fold from the wildtype reference at a False Discovery Rate (FDR) of 1%. These genes were considered significantly enriched. WBPaper00025141:unc-4::GFP_Enriched_Genes
  Genes expressed in embryonic motor neurons (identified by unc-4::GFP expressing cells). Genes called Present by MAS 5.0 in 2 out of 3 unc-4::GFP hybridizations. WBPaper00025141:unc-4::GFP_Expressed_Genes
  Single-cell RNA-Seq cell group 52 expressed in: Spermatheca neck distal-most. CellRanger, DecontX, Monocle3, Louvain algorithm. WBPaper00065623:52
  Single-cell RNA-Seq cell group 37 expressed in: e1_e3 (pharyngeal epithelium). CellRanger, DecontX, Monocle3, Louvain algorithm. WBPaper00065623:37
  Single-cell RNA-Seq cell group 62 expressed in: e2 (pharyngeal epithelium). CellRanger, DecontX, Monocle3, Louvain algorithm. WBPaper00065623:62
  Single-cell RNA-Seq cell group 76 expressed in: pm1_pm2 (pharyngeal muscle). CellRanger, DecontX, Monocle3, Louvain algorithm. WBPaper00065623:76
  Single-cell RNA-Seq cell group 157 expressed in: M1. CellRanger, DecontX, Monocle3, Louvain algorithm. WBPaper00065623:157
  Single-cell RNA-Seq cell group 96 expressed in: AIN. CellRanger, DecontX, Monocle3, Louvain algorithm. WBPaper00065623:96
  Single-cell RNA-Seq cell group 36 expressed in: Spermatheca bag proximal. CellRanger, DecontX, Monocle3, Louvain algorithm. WBPaper00065623:36
  Single-cell RNA-Seq cell group 164 expressed in: g1A (pharyngeal gland) . CellRanger, DecontX, Monocle3, Louvain algorithm. WBPaper00065623:164
  Single-cell RNA-Seq cell group 111 expressed in: AWC. CellRanger, DecontX, Monocle3, Louvain algorithm. WBPaper00065623:111
  Single-cell RNA-Seq cell group 104 expressed in: AWA. CellRanger, DecontX, Monocle3, Louvain algorithm. WBPaper00065623:104
  Single-cell RNA-Seq cell group 105 expressed in: AWB. CellRanger, DecontX, Monocle3, Louvain algorithm. WBPaper00065623:105
  Single-cell RNA-Seq cell group 91 expressed in: ADL. CellRanger, DecontX, Monocle3, Louvain algorithm. WBPaper00065623:91
  Single-cell RNA-Seq cell group 125 expressed in: AFD. CellRanger, DecontX, Monocle3, Louvain algorithm. WBPaper00065623:125
  Single-cell RNA-Seq cell group 148 expressed in: ADF. CellRanger, DecontX, Monocle3, Louvain algorithm. WBPaper00065623:148
  Single-cell RNA-Seq cell group 106 expressed in: ASH. CellRanger, DecontX, Monocle3, Louvain algorithm. WBPaper00065623:106
  Single-cell RNA-Seq cell group 114 expressed in: ASI. CellRanger, DecontX, Monocle3, Louvain algorithm. WBPaper00065623:114
  Single-cell RNA-Seq cell group 121 expressed in: ASE. CellRanger, DecontX, Monocle3, Louvain algorithm. WBPaper00065623:121
  Single-cell RNA-Seq cell group 126 expressed in: ASG. CellRanger, DecontX, Monocle3, Louvain algorithm. WBPaper00065623:126
  Single-cell RNA-Seq cell group 117 expressed in: ASJ. CellRanger, DecontX, Monocle3, Louvain algorithm. WBPaper00065623:117
  Single-cell RNA-Seq cell group 110 expressed in: ASK. CellRanger, DecontX, Monocle3, Louvain algorithm. WBPaper00065623:110
  Single-cell RNA-Seq cell group 35 expressed in: Mature sperm. CellRanger, DecontX, Monocle3, Louvain algorithm. WBPaper00065623:35
  Single-cell RNA-Seq cell group 40 expressed in: Arcade cells and rectal gland subpopulation. CellRanger, DecontX, Monocle3, Louvain algorithm. WBPaper00065623:40
  Single-cell RNA-Seq cell group 55 expressed in: Intestinal-rectal valve. CellRanger, DecontX, Monocle3, Louvain algorithm. WBPaper00065623:55
  Single-cell RNA-Seq cell group 51 expressed in: Intestine anterior. CellRanger, DecontX, Monocle3, Louvain algorithm. WBPaper00065623:51
  Single-cell RNA-Seq cell group 65 expressed in: Excretory gland. CellRanger, DecontX, Monocle3, Louvain algorithm. WBPaper00065623:65
  Single-cell RNA-Seq cell group 151 expressed in: Cephalic and inner labial socket. CellRanger, DecontX, Monocle3, Louvain algorithm. WBPaper00065623:151

0 Expression Patterns

0 Life Stages

3 Parents

Definition Name Synonym Primary Identifier
neuron that uses vesicular acetylcholine as a neurotransmitter. cholinergic neuron ACh neuron WBbt:0006840
  interneuron   WBbt:0005113
neuron that has neural processes in the nerve ring. nerve ring neuron   WBbt:0006974