WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Expression Cluster :

Algorithm  For differential gene expression analysis, sets of independent mutant and control mapped reads (e.g biological replicates) were used in cuffdiff analysis. The cutoff of FDR(q value)=0.05 was used as a significance cutoff for all the analyses. Description  Transcripts that showed significantly increased expression in L1 larva comparing to in embryo, in primordial germ cells (PGCs) of nos-1(gv5)nos-2(RNAi) animals, according to SMARTseq.
Primary Identifier  WBPaper00053321:embryo-to-L1_upregulated_nos-1(gv5)nos-2(RNAi)_SMARTseq
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1 Anatomy Terms

Definition Name Synonym Primary Identifier
member of a set of two cells that generate exclusively sperm and ovum. germline precursor cell PGC WBbt:0006849

511 Genes

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000001 aap-1 Y110A7A.10 Caenorhabditis elegans
WBGene00000068 acy-1 F17C8.1 Caenorhabditis elegans
WBGene00000074 adm-2 C04A11.4 Caenorhabditis elegans
WBGene00000090 age-1 B0334.8 Caenorhabditis elegans
WBGene00000103 akt-2 F28H6.1 Caenorhabditis elegans
WBGene00000105 alg-1 F48F7.1 Caenorhabditis elegans
WBGene00000146 ape-1 F46F3.4 Caenorhabditis elegans
WBGene00000161 apa-2 T20B5.1 Caenorhabditis elegans
WBGene00000163 apb-3 R11A5.1 Caenorhabditis elegans
WBGene00000190 warf-1 F45E4.1 Caenorhabditis elegans
WBGene00000207 asb-2 F02E8.1 Caenorhabditis elegans
WBGene00000208 trip-4 Y53F4B.15 Caenorhabditis elegans
WBGene00000274 btf-1 F15D4.1 Caenorhabditis elegans
WBGene00000276 byn-1 F57B9.5 Caenorhabditis elegans
WBGene00000379 cct-4 K01C8.10 Caenorhabditis elegans
WBGene00000426 ced-12 Y106G6E.5 Caenorhabditis elegans
WBGene00000459 ceh-38 F22D3.1 Caenorhabditis elegans
WBGene00000519 cku-70 Y47D3A.4 Caenorhabditis elegans
WBGene00000534 cpi-2 R01B10.1 Caenorhabditis elegans
WBGene00000535 cpi-1 K08B4.6 Caenorhabditis elegans
WBGene00000542 clp-1 C06G4.2 Caenorhabditis elegans
WBGene00000547 clp-7 Y77E11A.11 Caenorhabditis elegans
WBGene00000561 cnd-1 C34E10.7 Caenorhabditis elegans
WBGene00000627 col-50 T28F2.6 Caenorhabditis elegans
WBGene00000762 coq-2 F57B9.4 Caenorhabditis elegans
WBGene00000787 cps-6 C41D11.8 Caenorhabditis elegans
WBGene00000834 cua-1 Y76A2A.2 Caenorhabditis elegans
WBGene00000872 cyk-1 F11H8.4 Caenorhabditis elegans
WBGene00000903 daf-7 B0412.2 Caenorhabditis elegans
WBGene00000962 dhc-1 T21E12.4 Caenorhabditis elegans

2 Life Stages

Remark Definition Other Name Public Name Primary Identifier
  The first stage larva. At 25 Centigrade, it ranges 14-25.5 hours after fertilization, 0-11.5 hours after hatch. L1 larva Ce WBls:0000024
  The whole period of embryogenesis in the nematode Caenorhabditis elegans, from the formation of an egg until hatching. embryo Ce WBls:0000003

0 Processes

0 Regulated By Gene

0 Regulated By Molecule