WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Expression Cluster :

Algorithm  Top 300 enriched transcripts were determined by log2.ratio of the tpm in the cell type vs the tpm in the other cells * the log2 of the cell.type tpm. Description  Top 300 transcripts enriched in B cell, F cell, K cell, K' cell, U cell, Y cell according to single cell RNAseq.
Primary Identifier  WBPaper00061340:B_F_K_Kp_U_Y
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6 Anatomy Terms

Definition Name Synonym Primary Identifier
Rectal cell, postembryonic blast cell in male B cell lineage name: ABprppppapa WBbt:0003825
Rectal cell, blast cell in male F cell lineage name: ABplppppapp WBbt:0004799
Rectal cell, postembryonic blast cell K cell lineage name: ABplpapppaa WBbt:0004499
Rectal cell, postembryonic blast cell in male U cell lineage name: ABplppppapa WBbt:0004942
Rectal cell K' cell lineage name: ABplpapppap WBbt:0004497
Rectal cell at hatching, becomes PDA in hermaphrodite, postembryonic blast cell in male Y cell lineage name: ABprpppaaaa WBbt:0004578

299 Genes

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000228 atn-1 W04D2.1 Caenorhabditis elegans
WBGene00000273 brp-1 Y79H2A.1 Caenorhabditis elegans
WBGene00000431 ceh-6 K02B12.1 Caenorhabditis elegans
WBGene00000493 che-14 F56H1.1 Caenorhabditis elegans
WBGene00000526 clc-5 C01C10.4 Caenorhabditis elegans
WBGene00000584 cog-1 R03C1.3 Caenorhabditis elegans
WBGene00000599 col-10 B0222.8 Caenorhabditis elegans
WBGene00000601 col-12 F15H10.1 Caenorhabditis elegans
WBGene00000608 col-19 ZK1193.1 Caenorhabditis elegans
WBGene00000611 col-34 F36A4.10 Caenorhabditis elegans
WBGene00000664 col-89 F17C8.2 Caenorhabditis elegans
WBGene00000685 col-111 F29B9.9 Caenorhabditis elegans
WBGene00000692 col-118 T11B7.3 Caenorhabditis elegans
WBGene00000699 col-125 C29F4.1 Caenorhabditis elegans
WBGene00000704 col-130 F08G5.4 Caenorhabditis elegans
WBGene00000705 col-131 C39E9.3 Caenorhabditis elegans
WBGene00000716 col-143 T15B7.3 Caenorhabditis elegans
WBGene00000718 col-145 B0222.7 Caenorhabditis elegans
WBGene00000719 col-146 T06E4.6 Caenorhabditis elegans
WBGene00000728 col-155 F55C10.3 Caenorhabditis elegans
WBGene00000739 col-166 T07H6.3 Caenorhabditis elegans
WBGene00000741 col-168 T10E10.1 Caenorhabditis elegans
WBGene00000745 col-172 F38B6.5 Caenorhabditis elegans
WBGene00000750 col-177 F59F3.2 Caenorhabditis elegans
WBGene00000777 cpn-1 F43G9.9 Caenorhabditis elegans
WBGene00000902 daf-6 F31F6.5 Caenorhabditis elegans
WBGene00001174 egl-5 C08C3.1 Caenorhabditis elegans
WBGene00001188 egl-20 W08D2.1 Caenorhabditis elegans
WBGene00001247 elo-9 Y53F4B.2 Caenorhabditis elegans
WBGene00001362 exc-1 C46E1.3 Caenorhabditis elegans

1 Life Stages

Remark Definition Other Name Public Name Primary Identifier
  The second stage larva. At 25 Centigrade, it ranges 25.5-32.5 hours after fertilization, 11.5-18.5 hours after hatch. L2 larva Ce WBls:0000027

0 Processes

0 Regulated By Gene

0 Regulated By Molecule