WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

Expression Cluster :

Algorithm  For differential gene expression analysis, sets of independent mutant and control mapped reads (e.g biological replicates) were used in cuffdiff analysis. The cutoff of FDR(q value)=0.05 was used as a significance cutoff for all the analyses. Description  Transcripts that showed significantly decreased expression in L1 larva comparing to in embryo, in primordial germ cells (PGCs) of nos-1(gv5)nos-2(RNAi) animals, according to SMARTseq.
Primary Identifier  WBPaper00053321:embryo-to-L1_downregulated_nos-1(gv5)nos-2(RNAi)_SMARTseq
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1 Anatomy Terms

Definition Name Synonym Primary Identifier
member of a set of two cells that generate exclusively sperm and ovum. germline precursor cell PGC WBbt:0006849

548 Genes

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000106 alg-2 T07D3.7 Caenorhabditis elegans
WBGene00000140 anc-1 ZK973.6 Caenorhabditis elegans
WBGene00000223 atf-7 C07G2.2 Caenorhabditis elegans
WBGene00000268 bre-3 B0464.4 Caenorhabditis elegans
WBGene00000289 cam-1 C01G6.8 Caenorhabditis elegans
WBGene00000301 cav-1 T13F2.8 Caenorhabditis elegans
WBGene00000386 cdc-25.1 K06A5.7 Caenorhabditis elegans
WBGene00000387 cdc-25.2 F16B4.8 Caenorhabditis elegans
WBGene00000405 cdk-1 T05G5.3 Caenorhabditis elegans
WBGene00000407 cdk-5 T27E9.3 Caenorhabditis elegans
WBGene00000418 ced-4 C35D10.9 Caenorhabditis elegans
WBGene00000431 ceh-6 K02B12.1 Caenorhabditis elegans
WBGene00000449 ceh-27 F46F3.1 Caenorhabditis elegans
WBGene00000453 ceh-32 W05E10.3 Caenorhabditis elegans
WBGene00000455 ceh-34 C10G8.6 Caenorhabditis elegans
WBGene00000468 ces-1 F43G9.11 Caenorhabditis elegans
WBGene00000469 ces-2 ZK909.4 Caenorhabditis elegans
WBGene00000479 cgh-1 C07H6.5 Caenorhabditis elegans
WBGene00000500 chn-1 T09B4.10 Caenorhabditis elegans
WBGene00000503 cht-1 C04F6.3 Caenorhabditis elegans
WBGene00000506 cic-1 H14E04.5 Caenorhabditis elegans
WBGene00000512 ckb-2 B0285.9 Caenorhabditis elegans
WBGene00000552 cmd-1 T21H3.3 Caenorhabditis elegans
WBGene00000772 cpb-3 B0414.5 Caenorhabditis elegans
WBGene00000773 cpf-1 F28C6.3 Caenorhabditis elegans
WBGene00000865 cyb-1 ZC168.4 Caenorhabditis elegans
WBGene00000875 cyk-4 K08E3.6 Caenorhabditis elegans
WBGene00000897 daf-1 F29C4.1 Caenorhabditis elegans
WBGene00001001 dis-3 C04G2.6 Caenorhabditis elegans
WBGene00001005 dlc-1 T26A5.9 Caenorhabditis elegans

2 Life Stages

Remark Definition Other Name Public Name Primary Identifier
  The first stage larva. At 25 Centigrade, it ranges 14-25.5 hours after fertilization, 0-11.5 hours after hatch. L1 larva Ce WBls:0000024
  The whole period of embryogenesis in the nematode Caenorhabditis elegans, from the formation of an egg until hatching. embryo Ce WBls:0000003

0 Processes

0 Regulated By Gene

0 Regulated By Molecule