WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Expression Cluster :

Algorithm  Differential expression analysis was performed using DESeq2 v1.6.3 in R version 3.2.3. All analyses were performed with genes that had average expression level above 1 RPKM (fragments per kilobase per million, as calculated by Cufflinks). Description  Transcripts that showed significantly increased expression (fold change > 2, adjusted p-value < 0.05) in EKM99[met-2(n4256) set-25(n5021)] injected with vector RNAi, comparing to in control animals (N2 injected with vector RNAi).
Primary Identifier  WBPaper00050193:met-2(n4256)set-25(n5021)_upregulated_L1

0 Anatomy Terms

481 Genes

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000057 acr-18 F28F8.1 Caenorhabditis elegans
WBGene00000174 aqp-6 C32C4.2 Caenorhabditis elegans
WBGene00000267 bre-2 Y39E4B.9 Caenorhabditis elegans
WBGene00000473 cey-2 F46F11.2 Caenorhabditis elegans
WBGene00000499 chk-2 Y60A3A.12 Caenorhabditis elegans
WBGene00000622 col-45 F53G12.7 Caenorhabditis elegans
WBGene00000654 col-78 W07A12.5 Caenorhabditis elegans
WBGene00000670 col-95 Y41C4A.16 Caenorhabditis elegans
WBGene00000671 col-96 Y41C4A.19 Caenorhabditis elegans
WBGene00000685 col-111 F29B9.9 Caenorhabditis elegans
WBGene00000770 cpb-1 C40H1.1 Caenorhabditis elegans
WBGene00000864 cya-2 F59H6.7 Caenorhabditis elegans
WBGene00001105 dsl-3 Y41D4B.10 Caenorhabditis elegans
WBGene00001110 duo-1 F38B7.5 Caenorhabditis elegans
WBGene00001133 eat-2 Y48B6A.4 Caenorhabditis elegans
WBGene00001401 fbf-1 H12I13.4 Caenorhabditis elegans
WBGene00001482 fog-2 Y113G7B.5 Caenorhabditis elegans
WBGene00001544 gcy-19 C17F4.6 Caenorhabditis elegans
WBGene00001595 gld-1 T23G11.3 Caenorhabditis elegans
WBGene00001598 glh-1 T21G5.3 Caenorhabditis elegans
WBGene00001606 gln-5 F26D10.10 Caenorhabditis elegans
WBGene00001607 gln-6 C28D4.3 Caenorhabditis elegans
WBGene00001671 gpa-9 F56H9.4 Caenorhabditis elegans
WBGene00001673 gpa-11 C16A11.1 Caenorhabditis elegans
WBGene00001686 gpd-4 F33H1.2 Caenorhabditis elegans
WBGene00001862 him-3 ZK381.1 Caenorhabditis elegans
WBGene00001872 him-14 ZK1127.11 Caenorhabditis elegans
WBGene00001973 hmg-3 C32F10.5 Caenorhabditis elegans
WBGene00001977 hmg-12 Y17G7A.1 Caenorhabditis elegans
WBGene00002034 htp-3 F57C9.5 Caenorhabditis elegans

1 Life Stages

Remark Definition Other Name Public Name Primary Identifier
  The first stage larva. At 25 Centigrade, it ranges 14-25.5 hours after fertilization, 0-11.5 hours after hatch. L1 larva Ce WBls:0000024

0 Processes

2 Regulated By Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00012802 set-25 Y43F4B.3 Caenorhabditis elegans
WBGene00019883 met-2 R05D3.11 Caenorhabditis elegans

0 Regulated By Molecule