WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Expression Cluster :

Algorithm  For differential gene expression analysis, sets of independent mutant and control mapped reads (e.g biological replicates) were used in cuffdiff analysis. The cutoff of FDR(q value)=0.05 was used as a significance cutoff for all the analyses. Description  Transcripts that showed significantly decreased expression in fed nos-1(gv5)nos-2(RNAi) comparing to in starved wild type, in primordial germ cells (PGCs) at L1 larva, according to Truseq.
Primary Identifier  WBPaper00053321:nos-1(gv5)nos-2(RNAi)_downregulated_fed-L1_Truseq

1 Anatomy Terms

Definition Name Synonym Primary Identifier
member of a set of two cells that generate exclusively sperm and ovum. germline precursor cell PGC WBbt:0006849

265 Genes

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000112 alh-6 F56D12.1 Caenorhabditis elegans
WBGene00000144 apc-10 F15H10.3 Caenorhabditis elegans
WBGene00000159 aps-1 F29G9.3 Caenorhabditis elegans
WBGene00000237 bam-2 Y71F9AR.1 Caenorhabditis elegans
WBGene00000547 clp-7 Y77E11A.11 Caenorhabditis elegans
WBGene00000671 col-96 Y41C4A.19 Caenorhabditis elegans
WBGene00000673 col-98 F14F7.1 Caenorhabditis elegans
WBGene00000749 col-176 ZC373.7 Caenorhabditis elegans
WBGene00000770 cpb-1 C40H1.1 Caenorhabditis elegans
WBGene00000975 dhs-12 K08F4.9 Caenorhabditis elegans
WBGene00001035 dnj-17 T03F6.2 Caenorhabditis elegans
WBGene00001044 dnj-26 Y39C12A.8 Caenorhabditis elegans
WBGene00001377 eya-1 C49A1.4 Caenorhabditis elegans
WBGene00001413 fem-3 C01F6.4 Caenorhabditis elegans
WBGene00001606 gln-5 F26D10.10 Caenorhabditis elegans
WBGene00001639 gly-14 M01F1.1 Caenorhabditis elegans
WBGene00001647 gna-2 T23G11.2 Caenorhabditis elegans
WBGene00001785 gst-37 Y32G9A.1 Caenorhabditis elegans
WBGene00001816 haf-6 Y48G8AL.11 Caenorhabditis elegans
WBGene00001864 him-5 D1086.4 Caenorhabditis elegans
WBGene00001865 him-6 T04A11.6 Caenorhabditis elegans
WBGene00001997 hpr-9 Y39A1A.23 Caenorhabditis elegans
WBGene00002181 kal-1 K03D10.1 Caenorhabditis elegans
WBGene00002230 klp-20 Y50D7A.6 Caenorhabditis elegans
WBGene00003043 lip-1 C05B10.1 Caenorhabditis elegans
WBGene00003059 lpd-2 C48E7.3 Caenorhabditis elegans
WBGene00003074 lars-2 ZK524.3 Caenorhabditis elegans
WBGene00003083 lst-1 T22A3.3 Caenorhabditis elegans
WBGene00003183 mei-1 T01G9.5 Caenorhabditis elegans
WBGene00003414 mrp-8 Y75B8A.26 Caenorhabditis elegans

1 Life Stages

Remark Definition Other Name Public Name Primary Identifier
  The first stage larva. At 25 Centigrade, it ranges 14-25.5 hours after fertilization, 0-11.5 hours after hatch. L1 larva Ce WBls:0000024

0 Processes

0 Regulated By Gene

0 Regulated By Molecule