WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Expression Cluster :

Algorithm  Differential gene expression was assessed with a mixed regression model, including pathogen as a fixed and array as a random factor using the restricted maximum likelihood (REML) approach. The pathogen effect was evaluated with an F3-test using a pooled estimator of the error-variance and comparison of the tabulated p-values with the F distribution rather than a permutation analysis, which was unsuitable for this study because of low sample size (maximum of four replicates). To correct for multiple testing authors adjusted the significance level with the help of the false discovery rate (FDR). Description  Transcripts that showed significantly increased expression after 8 hour of exposure of C.elegans strain MY15 to pathogenic B. thuringiensis B-18247.
Primary Identifier  WBPaper00040209:B.thuringiensis_upregulated_MY15 Regulated By Treatment  Bacteria infection: Bacillus thuringiensis B-18247

0 Anatomy Terms

233 Genes

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000018 abl-1 M79.1 Caenorhabditis elegans
WBGene00000254 bli-4 K04F10.4 Caenorhabditis elegans
WBGene00000397 cdh-5 F08B4.2 Caenorhabditis elegans
WBGene00000464 ceh-44 Y54F10AM.4 Caenorhabditis elegans
WBGene00000478 cfz-2 F27E11.3 Caenorhabditis elegans
WBGene00000550 clu-1 F55H2.6 Caenorhabditis elegans
WBGene00000566 cnt-2 Y39A1A.15 Caenorhabditis elegans
WBGene00000783 cpr-3 T10H4.12 Caenorhabditis elegans
WBGene00000998 dig-1 K07E12.1 Caenorhabditis elegans
WBGene00001006 dlg-1 C25F6.2 Caenorhabditis elegans
WBGene00001032 dnj-14 K02G10.8 Caenorhabditis elegans
WBGene00001067 dpy-5 F27C1.8 Caenorhabditis elegans
WBGene00001225 eif-3.B Y54E2A.11 Caenorhabditis elegans
WBGene00001337 ears-1 ZC434.5 Caenorhabditis elegans
WBGene00001385 far-1 F02A9.2 Caenorhabditis elegans
WBGene00001598 glh-1 T21G5.3 Caenorhabditis elegans
WBGene00001955 hlh-11 F58A4.7 Caenorhabditis elegans
WBGene00002001 hars-1 T11G6.1 Caenorhabditis elegans
WBGene00002058 ifd-2 F25E2.4 Caenorhabditis elegans
WBGene00002068 ify-1 C27A2.3 Caenorhabditis elegans
WBGene00002207 sid-3 B0302.1 Caenorhabditis elegans
WBGene00002265 lec-2 F52H3.7 Caenorhabditis elegans
WBGene00003086 lst-4 Y37A1B.2 Caenorhabditis elegans
WBGene00003090 lys-1 Y22F5A.4 Caenorhabditis elegans
WBGene00003091 lys-2 Y22F5A.5 Caenorhabditis elegans
WBGene00003092 lys-3 Y22F5A.6 Caenorhabditis elegans
WBGene00003373 mlh-1 T28A8.7 Caenorhabditis elegans
WBGene00003528 nas-9 C37H5.9 Caenorhabditis elegans
WBGene00003710 nhr-120 C25B8.6 Caenorhabditis elegans
WBGene00003796 npp-10 ZK328.5 Caenorhabditis elegans

1 Life Stages

Remark Definition Other Name Public Name Primary Identifier
  The fourth stage larva. At 25 Centigrade, it ranges 40-49.5 hours after fertilization, 26-35.5 hours after hatch. L4 larva Ce WBls:0000038

0 Processes

0 Regulated By Gene

0 Regulated By Molecule