WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Expression Cluster :

Algorithm  Differential expression analysis was performed using DESeq2 v1.6.3 in R version 3.2.3. All analyses were performed with genes that had average expression level above 1 RPKM (fragments per kilobase per million, as calculated by Cufflinks). Description  Transcripts that showed significantly increased expression (fold change > 2, adjusted p-value < 0.05) in lsm-1(tm3585) injected with vector RNAi, comparing to in control animals (N2 injected with vector RNAi).
Primary Identifier  WBPaper00050193:lsm-1(tm3585)_upregulated_L3

0 Anatomy Terms

206 Genes

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000499 chk-2 Y60A3A.12 Caenorhabditis elegans
WBGene00000685 col-111 F29B9.9 Caenorhabditis elegans
WBGene00000770 cpb-1 C40H1.1 Caenorhabditis elegans
WBGene00001433 fkb-8 Y18D10A.25 Caenorhabditis elegans
WBGene00001482 fog-2 Y113G7B.5 Caenorhabditis elegans
WBGene00001671 gpa-9 F56H9.4 Caenorhabditis elegans
WBGene00001686 gpd-4 F33H1.2 Caenorhabditis elegans
WBGene00001862 him-3 ZK381.1 Caenorhabditis elegans
WBGene00001977 hmg-12 Y17G7A.1 Caenorhabditis elegans
WBGene00002034 htp-3 F57C9.5 Caenorhabditis elegans
WBGene00002063 ife-5 Y57A10A.30 Caenorhabditis elegans
WBGene00002143 inx-21 Y47G6A.1 Caenorhabditis elegans
WBGene00002144 inx-22 Y47G6A.2 Caenorhabditis elegans
WBGene00003992 pgl-1 ZK381.4 Caenorhabditis elegans
WBGene00003994 pgl-3 C18G1.4 Caenorhabditis elegans
WBGene00004049 parp-1 Y71F9AL.18 Caenorhabditis elegans
WBGene00004333 rec-8 W02A2.6 Caenorhabditis elegans
WBGene00004808 skr-2 F46A9.4 Caenorhabditis elegans
WBGene00005490 srh-286 Y59A8A.4 Caenorhabditis elegans
WBGene00005543 sri-31 B0454.2 Caenorhabditis elegans
WBGene00005574 sri-62 F34D6.5 Caenorhabditis elegans
WBGene00006375 syp-1 F26D2.2 Caenorhabditis elegans
WBGene00006916 vha-7 C26H9A.1 Caenorhabditis elegans
WBGene00007290 C04B4.2 C04B4.2 Caenorhabditis elegans
WBGene00007303 rnh-1.3 C04F12.9 Caenorhabditis elegans
WBGene00007615 set-31 C15H11.5 Caenorhabditis elegans
WBGene00007624 hrde-1 C16C10.3 Caenorhabditis elegans
WBGene00007659 pals-5 C17H1.6 Caenorhabditis elegans
WBGene00008003 enu-3.2 C38D4.1 Caenorhabditis elegans
WBGene00008387 zhp-2 D1081.9 Caenorhabditis elegans

1 Life Stages

Remark Definition Other Name Public Name Primary Identifier
  The third stage larva. At 25 Centigrade, it ranges 32.5-40 hours after fertilization, 18.5-26 hours after hatch. L3 larva Ce WBls:0000035

0 Processes

1 Regulated By Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003076 lsm-1 F40F8.9 Caenorhabditis elegans

0 Regulated By Molecule